PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024052001

Common Name

GSBRNA2T00024052001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 314aa MW: 34364.5 Da PI: 5.6415

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024052001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.7	3.7e-29	44	137	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li+++r e+r+rrg+ +++++W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ GSBRNA2T00024052001 44 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMETKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVM 133 8********************97778888888****************************************************99 PP trihelix 82 fdql 85 +++ GSBRNA2T00024052001 134 RNDV 137 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.458	44	110	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.9E-5	44	109	IPR009057	Homeodomain-like
Pfam	PF13837	3.6E-13	44	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MALEQQLGLA VTAVDGDGNG GGGENSAPSN EGGDDSVKTA RLPRWTRQEI LVLIQGKRVA 60 ENRVRRGRAA GMALGSGQME TKWASVSSYC RRHGVNRGPV QCRKRWSNLA GDYKKIKEWE 120 SQVKEETESY WVMRNDVRRE RKLPGFFDKE VYDVVDGGVV PPALALGLAP ASAAAEGVLS 180 ELERREPAPN KLLQDVFMDK EKQAACGADD QGLVKEKDAE AANPEAGSTS QEARKRKRTS 240 ASEDEEKEEE ATKSMDNQLI QILERNGQLL AAQLEVQNTN LKLDREQRKD HGDNLVAVLS 300 KLADAVAKIA DKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6150	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024052001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	0.0	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634192.1	0.0	PREDICTED: uncharacterized protein LOC106339873
Swissprot	Q8VZ20	1e-165	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A078GF37	0.0	A0A078GF37_BRANA; BnaC04g43950D protein
STRING	Bo4g182020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-136	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]