PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00023342001

Common Name

GSBRNA2T00023342001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 311aa MW: 34642 Da PI: 4.7769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00023342001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	256	297	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +E+ R d+i++a+ L +++P a K ++ L +A++Y+k L GSBRNA2T00023342001 256 NEQSRKDKIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 297 69******************9......5599999*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.232	248	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-6	256	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-4	257	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009826	Biological Process	unidimensional cell growth
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MPLDTRQRDL PPQPCFEDIA ARTVPLPELG RPYAAELQAR CLQPPPLQSL LWSHHDKESC 60 GKRFSMSDMR SWCAAAAATP HGALESSQKG LMIFDQSGNQ TRLLRCPFPL RFPSLAAAEE 120 PVKLKLSELQ HGLEKGFRED HVTLKEFDEK NCVNGKESEM HEDTEEINAL LYSDDDYDDC 180 ESDDDDDEVM STGHSPYQVC NKRALEEIDS PCKRQKLLDK VENISVSSSL VGSKSSTKLP 240 ESNISTKEDT GSGLSNEQSR KDKIRTALKI LESIVPGAKG NEALLLLDEA IDYLKLLKRD 300 LISTEIKNHC *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21559	1e-33	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269\|PubMed:16936072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269\|PubMed:16936072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00023342001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353013	2e-78	AK353013.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-O23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013643162.1	0.0	transcription factor SAC51-like
Swissprot	Q9FMF4	1e-137	SAC51_ARATH; Transcription factor SAC51
TrEMBL	A0A078J5Y5	0.0	A0A078J5Y5_BRANA; BnaAnng15170D protein
STRING	Bra024286.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-06	bHLH family protein

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J., 2008. 56(6): p. 881-90 [PMID:18694459] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]