PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022885001
Common NameGSBRNA2T00022885001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 207aa    MW: 23832.4 Da    PI: 9.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022885001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.7e-131321961787
                          E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           +pk fae h+ k  e++  ++ d ++++sW v    + +s+   +++GW + vk+ gLk+gD+++F+l++ 
  GSBRNA2T00022885001 132 GVPKMFAEMHMPK--EETVFKFHDpKQNKSWYVVS--KIQSR---FSRGWPGLVKDFGLKVGDVCTFELIKP 196
                          68*****999755..45689****5666*****99..66663...89*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-7124206IPR003340B3 DNA binding domain
CDDcd100177.95E-12130197No hitNo description
SuperFamilySSF1019364.51E-15130202IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-10132198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-13132203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.334133206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGKLMLSKYQ SFFYYMEQNG WDRDNGLGDD ELLTCSRTRM LRPCNHCFVE TRENKGESRC  60
LRQAQKLPVG GRLKQKRELA NLGNKQVKEA EKSNKCKKRK VDTDYDDDSE ASGTSSLVPE  120
FTLNQKEIIR PGVPKMFAEM HMPKEETVFK FHDPKQNKSW YVVSKIQSRF SRGWPGLVKD  180
FGLKVGDVCT FELIKPTEMI LTVDSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.49901e-109seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022885001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611359.19e-88PREDICTED: B3 domain-containing protein At5g18000-like isoform X1
SwissprotQ9FJG21e-39Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A078J5H61e-153A0A078J5H6_BRANA; BnaCnng32580D protein
STRINGBo9g123380.11e-110(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.16e-42VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]