PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022391001
Common NameGSBRNA2T00022391001, LOC106391640
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 255aa    MW: 28063.8 Da    PI: 8.006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022391001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-1069115354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  GSBRNA2T00022391001  69 RNHKEAERRRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115
                          58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.53866115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1269125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1269127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00102156221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQPETSDQML YSFLTGNEIP GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA  60
QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTL  120
EITDSDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDIM EILKSLHMKT  180
LRAEISTLGG RTRSVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGSGGGE  240
RSKRRRALDH IIMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022391001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687788.10.0transcription factor bHLH106
SwissprotO806741e-148BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A078J4D40.0A0A078J4D4_BRANA; BnaC04g56860D protein
STRINGBra016951.1-P0.0(Brassica rapa)
STRINGBo4g190700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-131bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]