PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00021663001 | ||||||||
Common Name | GSBRNA2T00021663001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 2246aa MW: 255004 Da PI: 5.5679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.7 | 5.7e-33 | 2002 | 2128 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 GfrF+Pt+eel+++yLk+k gk+ +ee+i+e++i+++eP+ Lp +k+k+++ wyfFs+ + + + k ++r+t++g+Wk tg GSBRNA2T00021663001 2002 LGFRFSPTQEELINFYLKNKNLGKEWIVEEAISEININSYEPKLLPslSKIKSNDLVWYFFSPYEYT--N-KTRKRTTSNGVWKLTGP 2086 6************************888899***************5448888888******98654..3.456778999******** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++k g ++g+ ktLv+++ + ++g t Wvmhey++ GSBRNA2T00021663001 2087 ERKIKDKggIGGEIGIVKTLVYHERKPSSGGWTPWVMHEYHI 2128 ******9654557***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 3.79E-8 | 11 | 98 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 8.8E-8 | 18 | 96 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 7.46E-50 | 130 | 393 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 8.0E-27 | 155 | 402 | IPR002182 | NB-ARC |
SMART | SM00382 | 2.8 | 165 | 299 | IPR003593 | AAA+ ATPase domain |
Gene3D | G3DSA:3.40.50.300 | 1.3E-9 | 166 | 285 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 3.7E-20 | 168 | 183 | No hit | No description |
PRINTS | PR00364 | 3.7E-20 | 240 | 254 | No hit | No description |
PRINTS | PR00364 | 3.7E-20 | 333 | 347 | No hit | No description |
SuperFamily | SSF46785 | 7.34E-9 | 370 | 474 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 5.61E-31 | 507 | 823 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.4E-27 | 510 | 810 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 1.6E-8 | 574 | 593 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 3.7E-20 | 743 | 759 | No hit | No description |
SuperFamily | SSF52200 | 1.7E-32 | 1153 | 1295 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 6.0E-17 | 1155 | 1286 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 27.599 | 1155 | 1293 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 2.5E-42 | 1156 | 1293 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 8.0E-45 | 1156 | 1325 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 2.5E-45 | 1326 | 1576 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 2.7E-19 | 1334 | 1575 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 1.6E-9 | 1348 | 1478 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00382 | 9.8E-4 | 1350 | 1491 | IPR003593 | AAA+ ATPase domain |
CDD | cd00009 | 1.65E-5 | 1356 | 1469 | No hit | No description |
SuperFamily | SSF46785 | 9.52E-6 | 1560 | 1646 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 3.91E-14 | 1687 | 1887 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.6E-12 | 1692 | 1892 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF101941 | 9.15E-39 | 1997 | 2146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.987 | 2000 | 2146 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-20 | 2003 | 2128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2246 aa Download sequence Send to blast |
MTDCEKAERF VYMSCVDEVR YSFVSHLFDA LRRNGISSVF VDSGDLLSDE AQEKVERARV 60 SVVVLPANRQ VCLEKLEKVL NCQRNKEQVV IPVLYGDSIL HGEWLSAMNL RGLSPVFQSR 120 NDCSDSKLVE KIVRNVNEKL LYMGRIGMSW KLREIENMVN KQPLGIRGVG IWGMPGIGKT 180 ELAKAVFDQV SGGFDACCFI EDYDKAFHEN RLFRILVEQL MKDQPANSGS ITKKRLRRDK 240 LMNKRVLVVL DDVRNPLLAE SFLEDFEWFG PESLIIITSR DKQVFRLCRI NQIYEVQGLT 300 EKEALQLFLL CASLNDMGEQ SLHEVAMEVI KYAHGNPLAL SIYGGALKGK ETPKDMETAF 360 LELKDRPPCK LVDAIKRTYD TLNDSEKNIF LDIACFFQGE NVDYVMQLLE GCGFSPHVGI 420 DSLIEKCLVA ITENRVRMCN FTQDVGRYMI TKGATVQIEK RSRLWEPQSI KDLLEDTEDT 480 ENGEPNVTVK FAQDTQELEA IFLDTSNLSF DIKPAAFENM LNLRLLKIYC SNPETHPVIS 540 FTRGFLHSLP GELRLFHWEN YPLQSFPQKF DPRNLVEINM PYSQLKKLWG GTKNLETLKT 600 IRLCHSRQLV DIDDILKAPS LERIDLQGCT NLQIFPPSGQ LLHLRVVNLS GCAEIKNFPD 660 VPPNIEKLHL QGTSIRSLPP SLVKPNRGEL VNLLAELSGL SDALKLERLS SLEKSSSSST 720 DVGKLSCLEL KNCSSLQSLP NMFHLEFLKV LDLSGCSELE IIQGFPQNLK ELYLTGTAVR 780 EVPQLPQSLE LLNAYGCASL ESIRLDSTQL PMHYSFSNCF KLSPQVVNQF LVKALANAKH 840 IPREHPQHAH PSHMISNLIS LLEQEFDKDL AFSFCAPTHP DQDSTIDLQP GSSVMIWLTP 900 SWRSALVGFV MQVEVAFSKD YYPATGFGIK CICRWKNKEG GSHRIEKNLH CWAPGKAVLQ 960 DHMLVFCDVK MRPRTDEGND PYILADLVVF EFYPVDNQSI RLDYSFTVER CGVYVITAAT 1020 GNTSLESISP VLSLDPNISS ALTFDSMDIS CNPSEELIKA SYDDLQEIDR ALFRCVAYLF 1080 NDEDIHLVKV EPLVACIDLN VSSRLKVLAK KHLLRVSSNG VIRMLPMGKE ILHRVSIGCS 1140 EEDSEKISVA SSGCWKYDVF LSFSSQDVRK SFLSHLLKAF ISKGITMFID NEIFRRQAIS 1200 PEVLQAIRES SILIVVFSRD YASSSWLLGE LAEIAKSRKE LSQIVIPVFY YVDPWHVKTQ 1260 AGDFGRQFGQ TCKKETEDEK QRWCQALTNI ADILGISFKN WDNEADMAET IANDVSSKLN 1320 ITESEGFGEF VRIENHVSKL NILLSLESEE VRMVGIWGPS GIGKTDIARA LYSRLAHRFQ 1380 RTIFVDMSFV YRRPDYYGAK VDFQTQFLSE VLGREYFKVG MDHLCMVRDM LKEQRVLIIL 1440 DDVDDQVRLL DVLVEQTEWF GSGSRIVVIT QDIGLLKSYG IDKIYYVDLP SQKEALQMFC 1500 QSAFRQNYPP DGFMEIAVEV AEAVGNLPLG LIVLGSYLRG REITEWVDIL TQIKDSLDGK 1560 MEMILRVAYD SLSDHDDKII YLHIACLFNY DTVEYVTCLL SDSHLSVVCR LKSLAEKSFI 1620 HITENGYITM HHLQQNFGRE IVRNESIYSP GKRQFLVDSE DILDVFQDNT GTESVLGISL 1680 DISELDRELY ISERGFSGMT NLRFLKFYTN LGNKEVNVHL PHGLDYLCPK LRLLHWEAFP 1740 MRCMPSHFFP ENLVVLAMEA SKLEKLWNEA QPLRSLKCMK ISRSISDLYL DGTAIEEVPW 1800 WIENISRLSH LSMNDSWQNH PEEISTSVTT VNMSGNSFQR LPDTWTSIQP EDLIFHSCRN 1860 LVSLPTLPTS LFRLTANNCE SLESLHGVLT IYLPRSSLSK RFPSFKACIM IESRSGSFHF 1920 GLLNYSDVQF EFDCLDDKKE MIQIKECGIQ LLEVSPSADE SGKIFKPESG YDSEESDVED 1980 IGSCKRIRVD YLFPDQMNNN RLGFRFSPTQ EELINFYLKN KNLGKEWIVE EAISEININS 2040 YEPKLLPSLS KIKSNDLVWY FFSPYEYTNK TRKRTTSNGV WKLTGPERKI KDKGGIGGEI 2100 GIVKTLVYHE RKPSSGGWTP WVMHEYHITC LPPDQRTYVL CKILYKGEAR DFPSGNNEVG 2160 IIPSDFPSAG NYSSDLCYSF VGDSNSVGAT SLTKMKKRQQ KLPSVQTPVV DSNTVRAANF 2220 SKMYRLLQNL PSVEIQGKFN SDTAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5h3c_A | 2e-50 | 1153 | 1328 | 1 | 174 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
5h3c_B | 2e-50 | 1153 | 1328 | 1 | 174 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
5tec_A | 2e-50 | 1153 | 1328 | 1 | 174 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
5tec_B | 2e-50 | 1153 | 1328 | 1 | 174 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00021663001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013714869.1 | 0.0 | disease resistance protein RRS1-like | ||||
Swissprot | Q9FL92 | 0.0 | RRS1B_ARATH; Disease resistance protein RRS1B | ||||
TrEMBL | A0A078GCT4 | 0.0 | A0A078GCT4_BRANA; BnaC09g18980D protein | ||||
STRING | Bo9g061240.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2506 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.1 | 0.0 | Disease resistance protein (TIR-NBS-LRR class) |
Publications ? help Back to Top | |||
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