PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00021594001 | ||||||||
Common Name | GSBRNA2T00021594001, LOC106410697, LOC106410698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 341aa MW: 39053.6 Da PI: 5.7105 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.8 | 4.1e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+ye+++d++ +++isws++++sf+v+ + ef+k++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ GSBRNA2T00021594001 14 FLTKTYEMVDDSSSDSIISWSDHNKSFIVKSPAEFSKDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFVRGQP 94 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 l+++i+r+k GSBRNA2T00021594001 95 YLMKNIHRRKP 105 ********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.1E-58 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.58E-34 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.0E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDENNGVSTS LPPFLTKTYE MVDDSSSDSI ISWSDHNKSF IVKSPAEFSK DLLPRFFKHK 60 NFSSFIRQLN TYGFRKVDPE KWEFANEDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQSPL 120 SESERQSMKD QIERLKRDKE VLLTDLQNQE LERKGFELQV TALKDRLQHM EQRQRSIVTF 180 VSQVLEKPGF SLNLETHETR KRKLQETETS LPPGRSHADQ VEKLESSLTF LENLVTESCD 240 KGMDIDVNES TSCAESLSNG DNRAKSTKID MNAEPVTVAV AAPKTGVNDV FWEQCLTENP 300 GSIEQQEVQS ERRDVDANKI GDGRTFWWKA KNVNDIAERA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22287 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings and at lower levels in leaves. {ECO:0000269|PubMed:18381353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00021594001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606495.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c | ||||
Refseq | XP_013606496.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c | ||||
Refseq | XP_013606497.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c | ||||
Refseq | XP_013706709.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Refseq | XP_013706711.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Refseq | XP_013706712.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Refseq | XP_013706713.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Refseq | XP_013706715.1 | 0.0 | heat stress transcription factor A-4c-like | ||||
Swissprot | Q9FK72 | 0.0 | HFA4C_ARATH; Heat stress transcription factor A-4c | ||||
TrEMBL | A0A078GES2 | 0.0 | A0A078GES2_BRANA; BnaC09g18620D protein | ||||
TrEMBL | A0A0D3E6P9 | 0.0 | A0A0D3E6P9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g062710.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 1e-180 | HSF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106410697 | 106410698 |
Publications ? help Back to Top | |||
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