PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00021295001 | ||||||||
Common Name | GSBRNA2T00021295001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 408aa MW: 43859.7 Da PI: 6.093 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 37.8 | 5e-12 | 12 | 111 | 2 | 85 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTT..............X CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekksks..............k 75 F ++lye ++d++l+ +isw+ +++nsf+v+d +f +++Lpk + +nf+ Fv L gF ++++ e+ + GSBRNA2T00021295001 12 FFMELYENVNDHSLDAIISWTnNSNNSFIVWDVPRFCTRILPKSVEfGKNFSEFVSELRHHGFLRIDHLETLMGLgfltlvgvtekdstR 101 8999*****************7778*****************97762479**************99998865333555555555443322 PP TTSEEEEESX CS HSF_DNA-bind 76 ekiweFkhks 85 + + +F+++ GSBRNA2T00021295001 102 DATSKFENPI 111 5566666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.2E-5 | 8 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.98E-12 | 9 | 81 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-12 | 10 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-11 | 12 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF52949 | 5.71E-7 | 92 | 227 | No hit | No description |
Gene3D | G3DSA:3.40.630.10 | 2.2E-58 | 214 | 399 | No hit | No description |
SuperFamily | SSF53187 | 8.79E-44 | 226 | 399 | No hit | No description |
Pfam | PF00883 | 6.3E-45 | 230 | 399 | IPR000819 | Peptidase M17, leucyl aminopeptidase, C-terminal |
PRINTS | PR00481 | 1.1E-25 | 310 | 327 | IPR011356 | Peptidase M17, leucine aminopeptidase/peptidase B |
PRINTS | PR00481 | 1.1E-25 | 334 | 355 | IPR011356 | Peptidase M17, leucine aminopeptidase/peptidase B |
PRINTS | PR00481 | 1.1E-25 | 372 | 393 | IPR011356 | Peptidase M17, leucine aminopeptidase/peptidase B |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004177 | Molecular Function | aminopeptidase activity | ||||
GO:0008235 | Molecular Function | metalloexopeptidase activity | ||||
GO:0030145 | Molecular Function | manganese ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MAHRSATGSY SFFMELYENV NDHSLDAIIS WTNNSNNSFI VWDVPRFCTR ILPKSVEFGK 60 NFSEFVSELR HHGFLRIDHL ETLMGLGFLT LVGVTEKDST RDATSKFENP ILNKLDAHVS 120 GLLDLVSSEE DFAGKPGKSA SSPAAFQDLG EAVATIAKAS QSSSVAVALS SHDNESKLSS 180 VSALELDCRY KSESKKPSLS SVDIIGFGTG PELENKLKYA EDVSYGVIFG RELINSPANV 240 LTPAVISDEA SKVASTYSDV FSANILNEEQ CRELKMGSYL AVASASAKAN PPFFIHLVYR 300 PPSGSVRTKH VLIGKGLTFD SDGYNIKAGP GSSINLMKFD MGGSAAILCA AKAIGEIKHP 360 GVEVHFIVAV CENMISGTGM RHGDVITASN EKTIELNKTT TQMLKVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ksi_A | 1e-109 | 87 | 402 | 44 | 387 | Leucine aminopeptidase 1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2890 | 1e-83 | leaf| microspore| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (Probable). Possesses leucine aminopeptidase activity against the model substrate leucine-amido methyl coumarin (PubMed:22493451). Possesses Cys-Gly dipeptidase activity. In addition, can cleave Cys-Leu and Leu-Cys dipeptides (PubMed:25716890). {ECO:0000269|PubMed:22493451, ECO:0000269|PubMed:25716890, ECO:0000305|PubMed:1555602}.; FUNCTION: Functions as molecular chaperone to protect proteins from heat-induced damage. {ECO:0000269|PubMed:22493451}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00021295001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633876.1 | 0.0 | PREDICTED: leucine aminopeptidase 1-like | ||||
Swissprot | P30184 | 1e-164 | AMPL1_ARATH; Leucine aminopeptidase 1 | ||||
TrEMBL | A0A078GC19 | 0.0 | A0A078GC19_BRANA; BnaA01g18590D protein | ||||
STRING | Bo4g145450.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 7e-20 | Winged helix-turn-helix transcription repressor DNA-binding |