PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020849001
Common NameGSBRNA2T00020849001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 285aa    MW: 32620.9 Da    PI: 6.506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020849001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.73.1e-20110169359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+ WrKYGqK++k+s++ rsYYrC+++    C +kk+ ++ +++p v  +tY g+H+++
  GSBRNA2T00020849001 110 DGFLWRKYGQKTIKQSKHQRSYYRCSYNidyACGAKKHEQKIKDNPPVYRTTYFGHHTCR 169
                          9**************************99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.028103171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-20105169IPR003657WRKY domain
SuperFamilySSF1182905.1E-20107170IPR003657WRKY domain
SMARTSM007742.5E-28108170IPR003657WRKY domain
PfamPF031061.9E-20110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNTSHEKAVQ AILYGHSCAK RLKLQLDHPV ADARSVSNYD LTKSIVHCFS DAISIFSDKS  60
KSEDDVFSDL SSRDYPPPLH QRSHSKKRKN NSTNSSENWR HDSPDPNYYD GFLWRKYGQK  120
TIKQSKHQRS YYRCSYNIDY ACGAKKHEQK IKDNPPVYRT TYFGHHTCRI NQNQDAGFTT  180
IGDPVDNLEN SRMIRFGQDL DQETIGLSVS VKDEKGIIKE ETMDQCRGIT GNDKDCQTVI  240
KENHQSSPSG SYTPSSSGSE IDMFDSDLLV EDLDLWDRYD LYDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-161101691069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088QRSHSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020849001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126547.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-114WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A078K2680.0A0A078K268_BRANA; BnaAnng39080D protein
TrEMBLM4DUK30.0M4DUK3_BRARP; Uncharacterized protein
STRINGBra020196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-103WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]