PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020756001
Common NameGSBRNA2T00020756001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 108aa    MW: 11165.1 Da    PI: 4.6968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020756001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.7e-173369135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg+++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  GSBRNA2T00020756001 33 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWAARGE 69
                         ********************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.28E-112769No hitNo description
SMARTSM004012.4E-152783IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.4472768IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-143168IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.63E-123269No hitNo description
PfamPF003201.0E-143369IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403360IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MPRNKGQLSS AGAYNSGTDQ DSAQDDSRPE ISCTHCGVSS TCTPMMRRGP SGPRTLCNAC  60
GLFWAARGEL GSDADANSSN YEPATVEEHS ALVSLANGDN SNMLGNH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020756001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353101e-49AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAY0860381e-49AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478829.18e-57PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-50GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078J2164e-73A0A078J216_BRANA; BnaC06g41200D protein
STRINGBra013805.1-P2e-53(Brassica rapa)
STRINGXP_006413426.17e-53(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-53GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]