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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00020288001 |
Common Name | GSBRNA2T00020288001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 205aa MW: 23362.8 Da PI: 7.4107 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00020288001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rq+tfskRr+g+lKKA+ELSvLCda+va i+fs++gklye++s
GSBRNA2T00020288001 9 KRIENKTSRQITFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYEFAS 59
79***********************************************86 PP
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2 | K-box | 52.3 | 2.5e-18 | 83 | 156 | 9 | 82 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82
+ee + + l++e++ + + ie Lq R+l+G+dL+s+s+ eL+++ q+eksl+ iRs+K ++ e++ +l+
GSBRNA2T00020288001 83 QEEDDVQDLKNEVTVMVNSIELLQLHCRKLMGQDLGSCSVDELNKITIQIEKSLTLIRSRKAKVHEEEVGKLKA 156
678899******************999*****************************************999986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MVRGKIEIKR IENKTSRQIT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYEFASS 60 DMKKMMEQCE IYRSGYFHAE RLQEEDDVQD LKNEVTVMVN SIELLQLHCR KLMGQDLGSC 120 SVDELNKITI QIEKSLTLIR SRKAKVHEEE VGKLKAEFEE KPLWMQSRSL ESENNASSSS 180 SAFENMNISD VETDLCIGLP RSQV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232542 | 4e-63 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |