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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00019975001 | ||||||||
Common Name | GSBRNA2T00019975001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 573aa MW: 64220.7 Da PI: 5.8975 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.1 | 5.6e-29 | 51 | 135 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea GSBRNA2T00019975001 51 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 135 8********************************************************************985555..6*******85 PP | |||||||
2 | trihelix | 104.4 | 8.3e-33 | 347 | 431 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s+ m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ GSBRNA2T00019975001 347 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISSSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 431 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 44 | 108 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.017 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.2E-19 | 50 | 136 | No hit | No description |
CDD | cd12203 | 7.56E-25 | 50 | 115 | No hit | No description |
SMART | SM00717 | 4.3E-4 | 344 | 406 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 346 | 403 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.3E-22 | 346 | 431 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 346 | 404 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.65E-29 | 347 | 411 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
GGGGGNEVVE EASPISSRPP ANMEELMRFS AAADDGGGLG GGSSSSSSGN RWPREETLAL 60 LRIRSEMDST FRDATLKAPL WEHVSRKLLE LGYKRNAKKC KEKFENVQKY HKRTKETRGG 120 RHEGKTYKFF SQLEALNTSA PLPPSSLDVT PLSVANPVQQ PSSQFPVFSL TQTPPPSSTA 180 SGMGSDDDDD DDDDMDVDQA GPSSHKRKRE NRGGKMMELF QGLVRQVMQK QAAMQRSFLE 240 ALEKREQERL AREEAWKRQE MSRLAREHEI MTQERAASAS RDAAIISLIQ KITGHTIQLP 300 PSLSSSQPSP PPPPAKLLPP PPHQPPPQQQ QQEMIMSSDQ SLPSSSRWPK EEILALINLR 360 SGMEPRYQDN VPKGLLWEEI SSSMKRMGYN RNAKRCKEKW ENINKYYKKV KESNKKRPQD 420 AKTCPYYHRL DLLYRSKVLG SGAGSSTSAL PQDQISNIQK QSPVSAMKPS QEGDVNVHQG 480 EEPREETPQG AEKPEDLVMR ELMQQKQQQE EDSMIGEYEK IEASHNYNME EEEMDEELDE 540 DEKSAAYEIA FQSPANRGGN GHSEPPFLTM VQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 101 | KRNAKKCKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25670 | 1e-93 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in growing root hairs, leaves, stems, and flowers. Present in abaxial epidermal cells, predominantly in guard cells, pavement cells, and meristemoids. {ECO:0000269|PubMed:21169508, ECO:0000269|PubMed:9501260}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00019975001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021045 | 1e-140 | AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence. | |||
GenBank | AC027035 | 1e-140 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. | |||
GenBank | AJ003215 | 1e-140 | AJ003215.1 Arabidopsis thaliana GTL1 gene. | |||
GenBank | AY140085 | 1e-140 | AY140085.1 Arabidopsis thaliana DNA-binding factor, putative (At1g33240) mRNA, complete cds. | |||
GenBank | BT008824 | 1e-140 | BT008824.1 Arabidopsis thaliana At1g33240 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-140 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013715103.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
Swissprot | Q9C882 | 0.0 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | A0A078JZE5 | 0.0 | A0A078JZE5_BRANA; BnaAnng38690D protein (Fragment) | ||||
STRING | Bra036731.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-110 | GT-2-like 1 |
Publications ? help Back to Top | |||
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