PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019753001
Common NameGSBRNA2T00019753001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 308aa    MW: 33247.9 Da    PI: 6.3687
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.93.9e-15213249135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++Rrgp+g++tLCnaCGl++  +g+
  GSBRNA2T00019753001 213 CTHCGISSscTPMMRRGPSGPRTLCNACGLFWTNRGT 249
                          *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.32876111IPR010399Tify domain
SMARTSM009793.8E-1476111IPR010399Tify domain
PfamPF062003.3E-1278110IPR010399Tify domain
PfamPF062033.7E-14145187IPR010402CCT domain
PROSITE profilePS5101711.905145187IPR010402CCT domain
SMARTSM004011.9E-13207260IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.726207266IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12209267No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14212254IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
PfamPF003201.3E-12213249IPR000679Zinc finger, GATA-type
CDDcd002022.59E-16213263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MFGHHTQPEI NPNQIGSSSA TVGEDHASAS AGHIPYDDMD DIPHPDSIYA ASDLIPDGSH  60
LVPHRSEGSE LLGSRPMEGA TQLTISFRGQ VYVFDAVGPE KVDAVLSLLG GSTELSSVQQ  120
GMELAPQNHM PAVVEYQNRY SHPQRAQSLD RFRKKRNARC FEKKVRYGVR QEVALRMARN  180
KGQFTSAKVT EGAYNSGTDQ DSAQDDSRPE ILCTHCGISS SCTPMMRRGP SGPRTLCNAC  240
GLFWTNRGTL RDLSKRTEEN QMAIIKPVEG GSVSDANNSN CEPATVEGHA ALVSLANGDQ  300
SNLLGNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.102040.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019753001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636464.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH61e-177GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078J0N90.0A0A078J0N9_BRANA; BnaC01g41520D protein
STRINGBo1g039000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-170GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]