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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00019592001 | ||||||||
Common Name | GSBRNA2T00019592001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 276aa MW: 31618.8 Da PI: 6.1159 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 54.5 | 2.5e-17 | 208 | 257 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r++W L +F++av++L G++ +Pk+ile m+v +Lt+e+v+SHLQ GSBRNA2T00019592001 208 KRRVVWDDYLNGKFLDAVNSL-GNNDVVPKKILERMNVSSLTRENVASHLQ 257 689******************.9999************************* PP | |||||||
2 | Response_reg | 43.5 | 1.7e-15 | 36 | 143 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+ d+++ +++l++ le+ +y ev+++ + e a+ ll++++ +D+ ++ + + ++l++ei +e ++pii+ ++ ++ e +++ GSBRNA2T00019592001 36 VLLFDEDRHYLHILEKHLEEFQY-EVTTCHEEERAMYLLCNHRnmFDIAIMEAHNLEGKIFRLISEIGSEI-DIPIIITSQDDSRESVTK 123 8999*******************.***************99999********99999999*******7766.8***************** PP HHHTTESEEEESS--HHHHH CS Response_reg 89 alkaGakdflsKpfdpeelv 108 ++ Ga d+l Kp+ pe+l+ GSBRNA2T00019592001 124 WMRNGACDYLIKPIRPEDLR 143 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 9.82E-21 | 32 | 155 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.4E-22 | 33 | 171 | No hit | No description |
SMART | SM00448 | 2.0E-4 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 25.053 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.5E-10 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.42E-10 | 37 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 206 | 257 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.47E-11 | 206 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-19 | 208 | 258 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MLQKWKASSD QSGGPDRDLP NSPDMFSGNF PEGLRVLLFD EDRHYLHILE KHLEEFQYEV 60 TTCHEEERAM YLLCNHRNMF DIAIMEAHNL EGKIFRLISE IGSEIDIPII ITSQDDSRES 120 VTKWMRNGAC DYLIKPIRPE DLRLIYKYLV KKMELRGITV AEEAEEKAAA EKSSSVGDST 180 IRSPNRRKRN MLQTDEDPDH NRDSATKKRR VVWDDYLNGK FLDAVNSLGN NDVVPKKILE 240 RMNVSSLTRE NVASHLQITT GLGSGLCPPR NPIRF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00019592001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232578 | 0.0 | AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597017.1 | 1e-176 | PREDICTED: two-component response regulator ARR14 | ||||
Refseq | XP_013706135.1 | 1e-176 | two-component response regulator ARR14-like | ||||
Swissprot | Q9FJ16 | 1e-101 | APRR4_ARATH; Putative two-component response regulator-like APRR4 | ||||
TrEMBL | A0A078IX64 | 0.0 | A0A078IX64_BRANA; BnaC07g49310D protein | ||||
STRING | Bra037427.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13222 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49240.1 | 5e-79 | pseudo-response regulator 4 |
Publications ? help Back to Top | |||
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