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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00019503001 | ||||||||
Common Name | GSBRNA2T00019503001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 162aa MW: 16691.8 Da PI: 7.395 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.2e-12 | 2 | 25 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C +f ++G+CkyG+rCkF H+ GSBRNA2T00019503001 2 QPACGNFKAYGFCKYGARCKFDHP 25 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0084 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-9 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-5 | 5 | 24 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
GQPACGNFKA YGFCKYGARC KFDHPVPIRV WICACSLPPS IPCVPVSICG AASSDCSSSV 60 ACGWVGIMVW ICACSPPSLL PCPSSIPSVS VSICGAASSG CISSTNTHIS CSNQTSENEK 120 EDDGTRQKCK NTSSEAKKGG KDPSAADNSR ERDTSDNAAW S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00019503001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078J0G0 | 1e-110 | A0A078J0G0_BRANA; BnaCnng30240D protein (Fragment) | ||||
STRING | Bo3g070110.1 | 3e-46 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 4e-12 | zinc finger nuclease 2 |
Publications ? help Back to Top | |||
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