PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00019262001 | ||||||||
Common Name | GSBRNA2T00019262001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-X1 | ||||||||
Protein Properties | Length: 919aa MW: 100564 Da PI: 8.1105 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.5 | 1.2e-07 | 230 | 248 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH G+C+pC+ GSBRNA2T00019262001 230 CGRHRCERSCHVGNCDPCQ 248 ******************6 PP | |||||||
2 | zf-NF-X1 | 17.1 | 1.2e-05 | 294 | 311 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH GpC+ C GSBRNA2T00019262001 294 CGNHLCSEVCHAGPCGDC 311 ****************99 PP | |||||||
3 | zf-NF-X1 | 21.9 | 3.8e-07 | 353 | 370 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C + CH G+CppC GSBRNA2T00019262001 353 CGLHTCTEACHGGDCPPC 370 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06008 | 1.63E-5 | 153 | 213 | No hit | No description |
SMART | SM00438 | 0.023 | 175 | 193 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.7 | 177 | 192 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.18E-12 | 220 | 268 | No hit | No description |
SMART | SM00438 | 1.5E-4 | 230 | 249 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.6E-5 | 230 | 247 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.31E-7 | 284 | 329 | No hit | No description |
SMART | SM00438 | 6.7E-4 | 294 | 313 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.8E-4 | 294 | 311 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.36E-12 | 343 | 390 | No hit | No description |
SMART | SM00438 | 8.5E-5 | 353 | 372 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.0E-4 | 353 | 370 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 12 | 408 | 434 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.021 | 408 | 421 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.60E-5 | 428 | 459 | No hit | No description |
Pfam | PF01422 | 0.014 | 432 | 455 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.017 | 438 | 457 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 9.8 | 459 | 477 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.28 | 512 | 543 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.093 | 512 | 527 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 180 | 545 | 571 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.097 | 552 | 573 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MSSQVRRDRS RFNPQQTWVP RGSSTSIAVV NEPTERSSES LHAGSTPSRP AYLQRQHNSS 60 GHSPYNQHQR SNVTAPPPPN NAPGTRPDNR QRVASNTRPV NEWKRVLLLN LPYSLCPGCQ 120 SVQLTSSREI SYRCFCGKRK DPPSDPYLTP HSCGEPCGKP LEKEFTAETA KEDLCPHVCV 180 LQCHPGPCPP CKAFAPPRSC PCGKKMIHTR CSERRSVLVC GQRCEKLLNC GRHRCERSCH 240 VGNCDPCQVL VNATCFCKKN VETVVCGDMN VKGELKAEDG VYSCNLNCGK GLGCGNHLCS 300 EVCHAGPCGD CDLLPSRVKT CYCGKKRLEE EIRESCLEPV PSCSNICLKL LPCGLHTCTE 360 ACHGGDCPPC FVQVTQKCRC ESTSRTVECY ITSSDFVCIK PCGRKKNCGR HRCSERCHLS 420 GDLDTHLCQL PCGKNLRCLQ HSCESLCHSG HCPPCFEPCG HCATHGCHFG DCPPCSAPVE 480 KKCVGGHVVL RNIPCGLRDI RCNKTCGKTR RCGTHACART CHQEPCDAYN ESEAGLRVVT 540 CGQTCGAPRR DCRHACAALC HPSQSCPDSR CEFPVTITCS CGRITATVPC DAGSNLRVES 600 LYEASVLQKL PTTLQPVESS GNRIPLGQRK LLCDDECAKL ERKRVDITPL NLDYVHFSEN 660 SAMTEIISDI YRRDPKWVLA VEERFKLLVL GKARGSASSV LKAHVFCPMP KDKRDTVRLL 720 AERWKLASKP PTRIIGARGG PHPPCFDPLV DIDPRLVVSL LDLPREANIN ALVLRFGGEC 780 VLVWLNDKNA LVVFHDHARA TTAMRRLDYG SVYHGAVVVQ NGSQSPSLGN AMGSSSSDAQ 840 KGNPWKKAVI QESDDDTWEA DIQASTWRSV TSNTPTLTSV NRWSVLEPEK PLVKTEGSSS 900 SKSASKQPVE SSSEESGG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16612 | 1e-94 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00019262001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013716091.1 | 0.0 | NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A078GB72 | 0.0 | A0A078GB72_BRANA; BnaC08g42350D protein | ||||
STRING | Bra031704.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Publications ? help Back to Top | |||
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