PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018550001
Common NameGSBRNA2T00018550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 312aa    MW: 35244.2 Da    PI: 8.0345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-0793115326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ fa+ G C++G++C+ +Hg
  GSBRNA2T00018550001  93 YPICS-FAAAGDCPRGSQCPHMHG 115
                          68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.155633IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7831IPR000571Zinc finger, CCCH-type
SMARTSM003560.0058832IPR000571Zinc finger, CCCH-type
SMARTSM003560.623355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.21190117IPR000571Zinc finger, CCCH-type
SMARTSM003560.02490116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-10140218IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.78E-13147223No hitNo description
CDDcd001620.0024158218No hitNo description
PfamPF000977.0E-8159216IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386159217IPR001841Zinc finger, RING-type
SMARTSM001848.7E-8159216IPR001841Zinc finger, RING-type
PROSITE patternPS005180183192IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.253246275IPR000571Zinc finger, CCCH-type
SMARTSM003560.75246274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIFSLFVNRI LCKFFIHGSC LKGEHCEYSH DSNVCTFYQK GICLYGSRCR NEHVRTTSQP  60
QSLSPSNVPP PQKGDDNNNN NNNDVCYIHP REYPICSFAA AGDCPRGSQC PHMHGDICST  120
CGKKCLHPFR PEEREEHTKE CQKKQKHIEA LKKSQEIECS VCLDRVLSKA TPGERKFGLL  180
TECHHPFCIQ CIRNWRSSAP VSGMDVNSTL RACPICRKLS YFVVPSVVWY STPDEKKEII  240
DIYKAKLRSI NCKHFNFGNG NCPFGGSCFY KHAYSDGHLD EVVVRNLGSQ EGETLIADSI  300
RLSEFLGRVH I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.159641e-147bud| leaf| microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018550001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724064.10.0E3 ubiquitin-protein ligase makorin
RefseqXP_022545289.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A078GAT20.0A0A078GAT2_BRANA; BnaC01g39490D protein
STRINGBra040048.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-170C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]