PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018363001

Common Name

GSBRNA2T00018363001, LOC106430080

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 491aa MW: 53940.5 Da PI: 6.793

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018363001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.2e-31	235	294	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ GSBRNA2T00018363001 235 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 294 58*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-33	220	296	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-28	228	296	IPR003657	WRKY domain
PROSITE profile	PS50811	28.908	230	296	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	235	295	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	236	294	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MEEHSQDGRE IAFLHSGDFL QRDSTSKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDLG 60 HMRTTIVGSS SFNSELAPVN SCLRTSSDDD GNDKTKAQIS RLRLELERLH EENHKLKHLL 120 DEISERYNDL QSRVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPMDMNN DIPATTLKRR 180 SPDDVDDRDH RDSPKAPRLY QNKSTNHEEQ QNPHDQLPFR KARVSVRARS DATTVNDGCQ 240 WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR KQVQRCAEDT TILTTTYEGN HNHPLPPSAT 300 AMAATTSAAA AMLLSGSNTS NFHQTLSTPS AMSSSSSSLY QNFPYTSTIA TLSATAPFPT 360 ITLDLTNPPR PLQPPPPPHF MSQYGPGAYL TNANQTRSIN DNYQQLLLPN LSGPQVPRDM 420 VDTVRAAIAT DPNFTAALAA AISNIIGGGN NNNNANTNDN NNNKVDAKSG GSSNGDSPPL 480 PQSCTTFSTT *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MEEHSQDGRE IAFLHSGDFL QRDSTSKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDLG  60
HMRTTIVGSS SFNSELAPVN SCLRTSSDDD GNDKTKAQIS RLRLELERLH EENHKLKHLL  120
DEISERYNDL QSRVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPMDMNN DIPATTLKRR  180
SPDDVDDRDH RDSPKAPRLY QNKSTNHEEQ QNPHDQLPFR KARVSVRARS DATTVNDGCQ  240
WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR KQVQRCAEDT TILTTTYEGN HNHPLPPSAT  300
AMAATTSAAA AMLLSGSNTS NFHQTLSTPS AMSSSSSSLY QNFPYTSTIA TLSATAPFPT  360
ITLDLTNPPR PLQPPPPPHF MSQYGPGAYL TNANQTRSIN DNYQQLLLPN LSGPQVPRDM  420
VDTVRAAIAT DPNFTAALAA AISNIIGGGN NNNNANTNDN NNNKVDAKSG GSSNGDSPPL  480
PQSCTTFSTT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	222	297	1	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018363001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430058	0.0	KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288912.1	0.0	probable WRKY transcription factor 47
Refseq	XP_013726314.1	0.0	probable WRKY transcription factor 47
Swissprot	Q9ZSI7	0.0	WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBL	A0A078G9D7	0.0	A0A078G9D7_BRANA; BnaA09g00350D protein
TrEMBL	M4F5F9	0.0	M4F5F9_BRARP; Uncharacterized protein
TrEMBL	V5RG65	0.0	V5RG65_BRACM; WRKY transcription factor 47
STRING	Bra036315.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7156	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	0.0	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	106430080

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]