PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017542001
Common NameGSBRNA2T00017542001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 559aa    MW: 61913.7 Da    PI: 6.2599
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017542001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-11209265155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  GSBRNA2T00017542001 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEEKAARAYDLAALKYWG 265
                          57*******************88885555446666.779999**************98 PP
2AP251.23.1e-16308359155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  GSBRNA2T00017542001 308 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 359
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15209275IPR016177DNA-binding domain
PfamPF008471.6E-8209265IPR001471AP2/ERF domain
CDDcd000181.07E-18209275No hitNo description
Gene3DG3DSA:3.30.730.106.4E-12210274IPR001471AP2/ERF domain
SMARTSM003801.3E-21210279IPR001471AP2/ERF domain
PROSITE profilePS5103217.372210273IPR001471AP2/ERF domain
PRINTSPR003674.4E-6211222IPR001471AP2/ERF domain
PfamPF008473.9E-11308359IPR001471AP2/ERF domain
CDDcd000181.62E-23308369No hitNo description
SuperFamilySSF541711.44E-17308369IPR016177DNA-binding domain
PROSITE profilePS5103218.782309367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17309368IPR001471AP2/ERF domain
SMARTSM003801.8E-32309373IPR001471AP2/ERF domain
PRINTSPR003674.4E-6349369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MNNNWLGFSL SPSDQNIHRT GVVDSSTATT AVDVTGEYCY DMTAASDESS AVQTSFPSPF  60
GVVLDAFTRD NNSHSRDWDI NGGACNNIHS NDQNEPKLEN FFGRTTTIYN NRENGGDGNG  120
GCGEGDGSGG SLGLSMIKTW LRNQPVSNVD HQDNNGNAAR GLSLSMNSST TCDSNNYNNS  180
NVVVQEKTNV DSVDATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQARK  240
GRQGGYDKEE KAARAYDLAA LKYWGTTTTT NFPISEYEIE VEDMNHMTRQ EYVASLRRKS  300
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF GTQEEAAEAY DIAAIKFRGL  360
TAVTNFEMSR YNVKAILDSP SLPIGSSAKR LKEVNHLVPS MMINNVSESE NDASGWQNAA  420
VQHHHGIDLS FLQQHQERYN NYYNGVTARA YFKEEEDQHH FLSNSNSQSL MANIDQHSSA  480
SGDMVTVYGN VDGYGSHQAL AIPVGTSLNC DALAAAEIAY DARNHYYFAQ QQQGGGVFLW  540
EFRIMLALIW AFTVWNNT*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017542001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
GenBankAF3179050.0AF317905.1 Brassica napus AP2/EREBP transcription factor BABY BOOM2 (BBM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619663.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A078J1S80.0A0A078J1S8_BRANA; BnaC02g44180D protein
STRINGBo2g013700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]