PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00017227001

Common Name

GSBRNA2T00017227001, LOC106375245

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 218aa MW: 24186.4 Da PI: 8.3199

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00017227001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.9e-10	44	93	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K ++ + Av++Ik+ GSBRNA2T00017227001 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---VKGKRAVSDHVNGAVNFIKD 93 6679**********************66...9999999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-12	39	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.547	42	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-7	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-8	44	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.17E-7	47	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDPYQNPSPK GYQRQRPFGS AGEGGSSGGS DIPREIDDNK KKKKLLHRDI ERQRRQEMAT 60 LFASLRSHLP LQYVKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCQTYKSSP 120 DPARTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLETLQ ELGLEVISCL 180 TTRVNERLMH TIQVEVNSFG CLDLAWLQQK LVEELIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00017227001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139189.1	1e-161	PREDICTED: transcription factor bHLH126-like
Refseq	XP_009139202.1	1e-161	PREDICTED: transcription factor bHLH126-like
Refseq	XP_013670566.1	1e-161	transcription factor bHLH126
Swissprot	Q9STJ6	1e-118	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A078J1H5	1e-159	A0A078J1H5_BRANA; BnaA01g35240D protein
TrEMBL	A0A398ATR7	1e-159	A0A398ATR7_BRACM; Uncharacterized protein
TrEMBL	M4DBM9	1e-159	M4DBM9_BRARP; Uncharacterized protein
STRING	Bra013889.1-P	1e-160	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-121	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106375245

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]