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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00016746001 | ||||||||
Common Name | GSBRNA2T00016746001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 302aa MW: 33814.3 Da PI: 9.858 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.1 | 3.6e-16 | 40 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++++ ++++qCk+k+e+++kry+ + +++++ s++p++++l+ GSBRNA2T00016746001 40 EWSEGAVSSLLEAYETKWALRNRAKLKGQDWEDVARHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATAEG------SSWPLYSRLD 123 5*************************************87766777788999*****************99997......46****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.2E-20 | 38 | 125 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEDGDSNQEH PQPLPTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWALR 60 NRAKLKGQDW EDVARHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT AEGSSWPLYS 120 RLDHLLRGNA STSAVLPLNC SAPLLLLEPP LAAVTHPPQQ PPAAQMSHGS NGVGTIKEEG 180 FKDDHKPERA TEMDTDSSTP VLCREKAKVR PKKVRRRYKE EKEEIAGSIR WLAEVVMRTE 240 RARMETMKEI EKMRAEAEVK RGEMDLKRTE IMANTQIEIA RLFAASVHKG GVDSSLRIGR 300 N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00016746001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116124.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A078JXT8 | 0.0 | A0A078JXT8_BRANA; BnaAnng37740D protein | ||||
STRING | Bra007069.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-137 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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