PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016247001
Common NameGSBRNA2T00016247001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 323aa    MW: 35799.7 Da    PI: 9.3641
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016247001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.5e-32176232158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQ+++I++RR++Rakle ++kl +k+rkpylheSRh hAl+RpRgsgGrF
  GSBRNA2T00016247001 176 NEPVFVNAKQFHAIMRRREQRAKLETQNKL-IKARKPYLHESRHVHALNRPRGSGGRF 232
                          59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-36174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.638175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.0E-27177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.6E-23178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.6E-23209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDKKDSFTTA HSTPPYLNTS ISWGLPTESN VQSYDVTESL SLKVHARSKH VLNPTKIGFQ  60
DKDSSSTQST DQSSTEVATS ADDDDDDDNP SRQISFSAQP DVCRGFEETQ RKVIPNNIRS  120
GSSHTTRISD IHFAPGKANF FFPCADPRFG GYLPHATVWH PKMVSRVPLP LELIDNEPVF  180
VNAKQFHAIM RRREQRAKLE TQNKLIKARK PYLHESRHVH ALNRPRGSGG RFLNTKKLQE  240
SKEPKHDTSI QQKDAKGNMS GFVAHQLQTS NDRGCSTTSG SDITSVTDGI KANPTMYIHG  300
QSNDMHGGGN RGGNTHHFSV HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-17178233460HAPB protein
4g92_A2e-17178233460HAPB protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016247001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-165AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117651.10.0PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-8
SwissprotQ9LNP61e-140NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A078G8M60.0A0A078G8M6_BRANA; BnaA09g44920D protein
STRINGfgenesh2_kg.1__1922__AT1G17590.31e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-133nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]