PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00016185001

Common Name

GSBRNA2T00016185001, LOC106365343

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 520aa MW: 57424.1 Da PI: 6.4151

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00016185001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.6e-30	238	297	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ GSBRNA2T00016185001 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 297 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	223	299	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-27	231	299	IPR003657	WRKY domain
PROSITE profile	PS50811	28.334	233	299	IPR003657	WRKY domain
SMART	SM00774	3.3E-35	238	298	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	239	297	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MENEDFLRST VHGREDRHEE TRKYVSSHDG SHEEQDHIIR SKLNSIRVEM EEAKEENRRL 60 KSSLSRTRKD FEILQTQYNQ LMVKHEDWTN KFSPKGHHQD KEDEDKVNIR EREELVLLSL 120 GRRSKSPVPS GSMTNQDEKG KGLMDETGDG KNIDEHDEGL SMGFEYKDLS NPSEKLEIDH 180 SQEKTSLEVN SSNKIPSENS FGFKNDGDDH EDEEELLPQN LVKKTRVSVR SRCETPTMND 240 GCQWRKYGQK IAKGNPCPRA YYRCTIAPSC PVRKQVQRCS EDMSILISTY EGTHNHPLPA 300 SATPMASATS TAASMLISGA SSSGAADLHG LNFSLSGNSI TPKPKSPFLQ TSSSPSSSGH 360 PTVTLDLTAS SSSQQTFLSM LNRFSASPSN VPRSNSYPST NLNFSNNTNT LMNWGGDSGS 420 GNRNEQYRAA FGNVGTPQQS PYRYMIQTRT TGSSFDPFGR SSSSSTNPTH QMQSLPAETI 480 KAITTDPSFQ SALATALSSI IGGDLKMDNV TKDEAGKSP*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MENEDFLRST VHGREDRHEE TRKYVSSHDG SHEEQDHIIR SKLNSIRVEM EEAKEENRRL  60
KSSLSRTRKD FEILQTQYNQ LMVKHEDWTN KFSPKGHHQD KEDEDKVNIR EREELVLLSL  120
GRRSKSPVPS GSMTNQDEKG KGLMDETGDG KNIDEHDEGL SMGFEYKDLS NPSEKLEIDH  180
SQEKTSLEVN SSNKIPSENS FGFKNDGDDH EDEEELLPQN LVKKTRVSVR SRCETPTMND  240
GCQWRKYGQK IAKGNPCPRA YYRCTIAPSC PVRKQVQRCS EDMSILISTY EGTHNHPLPA  300
SATPMASATS TAASMLISGA SSSGAADLHG LNFSLSGNSI TPKPKSPFLQ TSSSPSSSGH  360
PTVTLDLTAS SSSQQTFLSM LNRFSASPSN VPRSNSYPST NLNFSNNTNT LMNWGGDSGS  420
GNRNEQYRAA FGNVGTPQQS PYRYMIQTRT TGSSFDPFGR SSSSSTNPTH QMQSLPAETI  480
KAITTDPSFQ SALATALSSI IGGDLKMDNV TKDEAGKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	225	299	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00016185001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013660242.1	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A078GAF5	0.0	A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBL	A0A3P5YSN3	0.0	A0A3P5YSN3_BRACM; Uncharacterized protein
STRING	Bra031053.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Entrez Gene	106365343

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]