PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016166001
Common NameGSBRNA2T00016166001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 207aa    MW: 23199.4 Da    PI: 7.141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-191060155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  GSBRNA2T00016166001 10 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 60
                         89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-211069IPR016177DNA-binding domain
CDDcd000186.21E-301070No hitNo description
PfamPF008472.8E-121060IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-301169IPR001471AP2/ERF domain
SMARTSM003808.0E-331174IPR001471AP2/ERF domain
PROSITE profilePS5103222.2071168IPR001471AP2/ERF domain
PRINTSPR003671.3E-91223IPR001471AP2/ERF domain
PRINTSPR003671.3E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEEEGSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTPEKAARA FDAALFCLRG  60
SNANFNFPDN PPAISGGGNM SRSEIREAAA RFANSEENVA REKDEEMMQQ ECTTPSAASS  120
SMMMMTMDVD DSEFLSMLPT VGSGNFAADF GLFPGLMISP MSTPASVSEK SFHLQGIMRV  180
TMARRCIFGI FEVCFFWARR PYQLRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-159681272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.42590.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016166001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117558.11e-108PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-74ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A078GAE61e-150A0A078GAE6_BRANA; BnaA09g44290D protein
STRINGBra031069.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]