PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016038001
Common NameGSBRNA2T00016038001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 435aa    MW: 48078.5 Da    PI: 4.5392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016038001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.6e-4861341129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtd elv +yLk+kv gkkl + ++i+++diyk+eP+dLp k  +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk
  GSBRNA2T00016038001   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIADLDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGK 94 
                          579************************999.89**************96347778888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +++vl+ +ge vg  ktLv++ g++p+ge+tdWvmheyrle
  GSBRNA2T00016038001  95 ERAVLC-NGESVGKIKTLVYHVGKSPRGERTDWVMHEYRLE 134
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-573156IPR003441NAC domain
PROSITE profilePS5100552.6896156IPR003441NAC domain
PfamPF023658.4E-268133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGKTELAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAD LDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERAVLC NGESVGKIKT LVYHVGKSPR  120
GERTDWVMHE YRLEDNVLTQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE  180
HRTDVPSTSN ASIFLHGLNA ETRLAVAPSH DSNKACFGGM MSESCVSDFP PATATASVAA  240
HLTDAANAPM PASLLDPSSS ASLAQTLQAP NDDDDLYAML DLFVDEDEFL PFSEPNTNEA  300
RHDPNVSAPI SLGEEVIFDD LPDFSNMHDN NSIPRTPSYN LIENSELYLE LQDLTTPLAP  360
PHVWNVSDSY LTAPLAPPQV GSVSDSYLTA PPAPPQNGNV SEPFLSPQGH FDFSAAANDD  420
PYSFLRPWDN TDQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-43615615168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.61990.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016038001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667580.0KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611566.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_013611567.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078G5470.0A0A078G547_BRANA; BnaC09g47170D protein
STRINGBo9g174090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-167NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]