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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00015245001 |
| Common Name | GSBRNA2T00015245001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
bHLH |
| Protein Properties |
Length: 432aa MW: 47808.6 Da PI: 6.2719 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00015245001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.6 | 8.3e-12 | 250 | 292 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L
GSBRNA2T00015245001 250 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 292
79*********************66......****************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MNGNGTWLHD AGEPSQANDN DESRTWVRNT EENWFSNPQP LNPLHNNQND FRFNSGAFPS 60
NPSENLLLLL QQEQQQQQQQ SFLTTKACMA SLLNIPTSNT NNNINSNPFD ELGFSSGFLG 120
QTNQTPLSMS FSGMSSPPDF LSSRSIPPPE NSSFTPLEFA GVANGVFENR AKVLKPLEVL 180
ASSTSQPTLF QKRAAMRQSS SSKTCNSESS SEMRRSSYEP DIDDTSTGII DISDEHNKGK 240
KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH 300
TELESTAPPS SSSLNPLTPT TQTLSYRVKE ELCPSSSFPS PRGEQARIEV KLREGKAVNI 360
HMFCGRRPGL LLSTMRALDN LGLDVQQAVV SCFNGFALDV FRAEQCQEGH DVVPEQIKAV 420
LLDTVGYTGL V*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 239 | 257 | KKKGMPAKNLMAERRRRKK |
| 2 | 251 | 258 | ERRRRKKL |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. Broad expression within stomatal cell lineages of leaf epidermis, except in mature guard-cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18641265}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118011 | 1e-180 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. |
| GenBank | BT005377 | 1e-180 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. |
| GenBank | EU369670 | 1e-180 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV
The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity.
Dokl. Biol. Sci., 2009.
[PMID:19760875] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Emmerstorfer A, et al.
Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris.
Biotechnol J, 2015. 10(4): p. 623-35
[PMID:25641738] - Lee HG,Seo PJ
The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
Plant J., 2015. 82(6): p. 962-77
[PMID:25912720] - Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC
Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31
[PMID:27382177] - Fu ZW,Wang YL,Lu YT,Yuan TT
Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis.
Plant Sci., 2016. 252: p. 282-289
[PMID:27717464] - de Marcos A, et al.
A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.
Plant Physiol., 2017. 174(2): p. 823-842
[PMID:28507175]
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