PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015037001
Common NameGSBRNA2T00015037001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 205aa    MW: 22593.4 Da    PI: 7.7603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015037001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1856105255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSBRNA2T00015037001  56 TYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 105
                          69****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-1256105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-3356114IPR001471AP2/ERF domain
SMARTSM003805.3E-4056119IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103222.99856113IPR001471AP2/ERF domain
PRINTSPR003676.4E-115768IPR001471AP2/ERF domain
CDDcd000189.68E-3457115No hitNo description
PRINTSPR003676.4E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKKLKLMDHS SCRRRYHDPP SQATARTLNN NNNNPKKKRV VKEDLDDEKI VSKHPTYRGV  60
RMRQWGKWVS EIREPKKKSR IWLGTFSTAE MAARAHDVAA LAIKGGSAHL NFPELAYQLP  120
RPASADPKDI QAAAAAAAAA VAVDMEVETS TPSPVSSEPS SPATTALADD AFSDLPDLLL  180
DVNHNIDGFW DSFPYEEPFF SGTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1744113272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.23330.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015037001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8423060.0AY842306.1 Brassica napus transcription factor DREBIII-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143633.11e-149PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP36e-92ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLQ5MAR71e-149Q5MAR7_BRANA; BnaAnng37500D protein
STRINGBra005314.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-80ERF family protein
Publications ? help Back to Top
  1. Liu Y,Zhao TJ,Yan YB,Zhou HM
    Increase of soluble expression in Escherichia coli cytoplasm by a protein disulfide isomerase gene fusion system.
    Protein Expr. Purif., 2005. 44(2): p. 155-61
    [PMID:15882951]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Liu Y, et al.
    The conserved Ala37 in the ERF/AP2 domain is essential for binding with the DRE element and the GCC box.
    FEBS Lett., 2006. 580(5): p. 1303-8
    [PMID:16457823]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]