PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00014981001

Common Name

GSBRNA2T00014981001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 290aa MW: 30288.8 Da PI: 6.1396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00014981001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.2e-12	96	141	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ K +Ka++L + +eY++ Lq GSBRNA2T00014981001 96 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 141 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-16	89	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.51E-12	89	145	No hit	No description
PROSITE profile	PS50888	17.028	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-16	93	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	96	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	97	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MENGNGEGKG EFINQNNSDY FLDSMSMLSS LPPCWDSSLP PPHPPPPQSL LHALTESGGP 60 SQDGLQAQGT VSTTSAPVAC QKPRVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN 120 TNKTDKASML DEIIEYVRFL QLQVKVLSVS RLGGARAAGG PGFNGLTSEV GGRLNPLSGP 180 SNGLNGKGNG TGSSNESLRS TEQRVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISSTS 240 NHSRGALFNP ISNIVAAEEA NVANASASAA AAAPEASTSM EDDVSASKA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	105	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00014981001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120317.1	1e-170	PREDICTED: transcription factor bHLH82-like
Swissprot	Q9LSQ3	1e-157	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A078J065	0.0	A0A078J065_BRANA; BnaA10g29390D protein
TrEMBL	A0A3P6CTN2	0.0	A0A3P6CTN2_BRACM; Uncharacterized protein
TrEMBL	M4CEP8	0.0	M4CEP8_BRARP; Uncharacterized protein
STRING	Bra002679.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11585	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-114	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]