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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00014591001 | ||||||||
Common Name | GSBRNA2T00014591001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 242aa MW: 26792.2 Da PI: 8.3982 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.7 | 5e-32 | 53 | 106 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGC+Efmp+ g+egt++alkCaACgCHRnFHR+e GSBRNA2T00014591001 53 RFRFRECLKNQAVNIGGHAVDGCREFMPA-GTEGTIDALKCAACGCHRNFHRKEL 106 789*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.3E-29 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-27 | 55 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-25 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.958 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 151 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.62E-17 | 153 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-26 | 162 | 218 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNLHEEEEDN AVYDSPPLPP SSRVLKASTE SPDTAGTNLT GGGGFMVVHG GSRFRFRECL 60 KNQAVNIGGH AVDGCREFMP AGTEGTIDAL KCAACGCHRN FHRKELPYFH HHAPPPPRGF 120 YRLPAPVSYR PSPSQASPVQ LALPPPAEDR METSSAEAGG IRKRFRTKFT AEQKERMLGL 180 AERIGWRIQR QDDEVIQRFC QETGVPRQVL KVWLHNNKHT RGMSSSSPLD QHENHTLPPP 240 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-35 | 161 | 220 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6369 | 3e-80 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00014591001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240937 | 0.0 | AC240937.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF101J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013738535.1 | 1e-180 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9FKP8 | 1e-109 | ZHD1_ARATH; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A397Y0G6 | 1e-180 | A0A397Y0G6_BRACM; Uncharacterized protein | ||||
STRING | Bra037816.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13237 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65410.1 | 1e-106 | homeobox protein 25 |
Publications ? help Back to Top | |||
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