PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00014375001 | ||||||||
Common Name | GSBRNA2T00014375001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 275aa MW: 30573.4 Da PI: 4.0469 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.8e-06 | 148 | 167 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ff++ G C++G++C+ +Hg GSBRNA2T00014375001 148 CKFFLQ-GRCRFGSSCRLSHG 167 ******.*********98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.089 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-5 | 142 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 147 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPDL LSVHEELVGA IKDAEEGLFQ 60 LKRARLLQEA DIVLHGLNNN AAAVKPERTD PASELELEPE RKDLDDGSKC RFRHIDGRWY 120 NGRIIGFEGS DSAKISFLTP TSESMMMCKF FLQGRCRFGS SCRLSHGVDV PISSLKNYEE 180 TEWKQSMVGS KIWAVSGSKY DVWRVGELES WDDKLQLGGV VFRDDGSSAK LGSDAMVLSE 240 YADDDGEGED EEEEEDGSGS GSEEESVSSD YDEEF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23397 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00014375001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013664043.1 | 1e-165 | zinc finger CCCH domain-containing protein 22-like | ||||
Swissprot | Q9SK49 | 1e-131 | C3H22_ARATH; Zinc finger CCCH domain-containing protein 22 | ||||
TrEMBL | A0A078K0D6 | 0.0 | A0A078K0D6_BRANA; BnaAnng37140D protein (Fragment) | ||||
STRING | Bra007830.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9437 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-130 | C3H family protein |
Publications ? help Back to Top | |||
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