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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00014233001 | ||||||||
Common Name | GSBRNA2T00014233001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 369aa MW: 40633.4 Da PI: 8.5662 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.3e-32 | 218 | 273 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ GSBRNA2T00014233001 218 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 273 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.038 | 215 | 275 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-17 | 215 | 276 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-28 | 216 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 218 | 273 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-8 | 220 | 271 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MENDYAQKMQ RCHEYVEALK EEQKKIQVFQ RELPLCLELV TQAIEACRKE LSSTSTTSEQ 60 CSEQTTSVSG GPVLEEFIPT KKIEENGEHE SPTPEEIGNN VDKKKSDWLR SVQLWNPSPD 120 TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV 180 VASAPATTTS STTETCAVGK EREEQVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG 240 SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI 300 WVPSPQEVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGRC NSQAASSSTN 360 TTTSSPVS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.3463 | 0.0 | leaf| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00014233001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127661.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q8VZS3 | 1e-153 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | A0A078IZB9 | 0.0 | A0A078IZB9_BRANA; BnaA02g35660D protein | ||||
STRING | Bra038360.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-107 | G2-like family protein |
Publications ? help Back to Top | |||
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