PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013939001
Common NameGSBRNA2T00013939001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 557aa    MW: 62466.1 Da    PI: 4.9243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013939001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30273330259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +D y+WrKYGqK vkg+++prsYY+C+++gC+vkk+ver+a+d +++ +tY g+H h 
  GSBRNA2T00013939001 273 NDDYRWRKYGQKIVKGNPNPRSYYKCSHKGCNVKKHVERAADDLRMLLVTYYGKHGHA 330
                          7******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-31258332IPR003657WRKY domain
SuperFamilySSF1182908.89E-27267332IPR003657WRKY domain
PROSITE profilePS5081132.156267332IPR003657WRKY domain
SMARTSM007744.7E-34272331IPR003657WRKY domain
PfamPF031062.6E-24273329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSDYGDGNFM DMVSSNWAPP PSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN  60
IPPIRTDNLS PFAVSKNPKT VPFGIEISPG LSSSVMLQSP SHLINPYSFP NDELPETVEN  120
SGDDHAKTMI FNNDVPYQPM HFDLPPQEDS NVIPALIPSH ESHVDPIGVP LVASFESEVA  180
DDTDTIKLMS LDDESESQDE EESNEDEDTD DPSKLGRKRR IDEEEDDDIA DEHEVKPSSP  240
KRSRKYDEVS NMMTALRTSN VMLRMETEED QPNDDYRWRK YGQKIVKGNP NPRSYYKCSH  300
KGCNVKKHVE RAADDLRMLL VTYYGKHGHA APLTRSSSSS GPKNLSRSSV PARLGRPPFS  360
SSSAAQDMRP FPYPSASAPR DMRRFGYPSA LAPQAMRPFP SSLNPGVDMT HLYKTGLPKL  420
PRLPVNQNHG FMGQNAEPWV NQNHEFMGQN AEPWVNQNHG FMGQNDEAWV NQNHGFMGQN  480
DEAWVNQNHG FMGQNDEPWL NQNHGFMGQN DEPWVNQNHV FMGQNDEPKT DHVIPDGTEV  540
YKGLMERMLA NLGVKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22263332877Probable WRKY transcription factor 4
2lex_A2e-22263332877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013939001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590971.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A078IT850.0A0A078IT85_BRANA; BnaC06g07320D protein
STRINGBo6g034690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2037656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.17e-43WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]