PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013704001
Common NameGSBRNA2T00013704001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21325.2 Da    PI: 9.0425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013704001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191362150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k +e++ nr +tfskR++gi+KK +EL  LC++e+a + fs+tgk ++++
  GSBRNA2T00013704001 13 KEVEDYENRMTTFSKRKTGIFKKMSELVALCGVEAAFVAFSETGKSHTFA 62
                         5789*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-22564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.497565IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-22574IPR002100Transcription factor, MADS-box
CDDcd001207.32E-25664No hitNo description
PRINTSPR004043.2E-15727IPR002100Transcription factor, MADS-box
PfamPF003192.9E-201561IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-152742IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-154263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKNTKGKQKI EMKEVEDYEN RMTTFSKRKT GIFKKMSELV ALCGVEAAFV AFSETGKSHT  60
FAHPSMEDAV GRLKSPLIDE SPRKDDTNTP SLVGAYKRQK NEELKKLYAD FAEELELEEE  120
KEKKLKKSKS DKRFDKKWWN AEGLSVEERK QMHQSFVELN VSLCGKVSQQ FRKDGDGSSA  180
DLAGHGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013704001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635263.11e-128PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A078JXZ91e-135A0A078JXZ9_BRANA; BnaCnng72100D protein
TrEMBLA0A0D3AFP21e-135A0A0D3AFP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G7J21e-135A0A3P6G7J2_BRAOL; Uncharacterized protein
STRINGBo1g152200.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-47AGAMOUS-like 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]