PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012713001
Common NameGSBRNA2T00012713001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 324aa    MW: 36145.5 Da    PI: 8.8363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012713001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-051234123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+k F++  +L  Hir H
  GSBRNA2T00012713001 12 YVCKFCNKKFPSGKSLGGHIRIH 34
                         9********************99 PP
2zf-C2H212.40.00049271293123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00012713001 271 HECPICFRVFKSGQALGGHKRSH 293
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-7937IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-7938No hitNo description
PfamPF139125.5E-61230IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2171239IPR007087Zinc finger, C2H2
SMARTSM003550.00361234IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576678.65E-5268296No hitNo description
PfamPF139121.8E-11270294IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034271298IPR007087Zinc finger, C2H2
SMARTSM003550.14271293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEMEKKMIEK KYVCKFCNKK FPSGKSLGGH IRIHTNEYSV ASDSNSGKNP KKNKRLVDHR  60
EITSLKQQQQ QICCRECGSN HMNCHCEREK MVMDSQSDTE TTSSAPTRKR SKKLMKQSES  120
FISSSASEID QEHKDTALSL MMMSIDSKGH NLVVNSLADS SENNSEILET KASSGEQLSL  180
KNQDLKTDKV AVDDQLRSAN DSSDSDYFMN GPKKSDSDIS VDGSLRNTEL NRFKNDDELG  240
VKERGSNKIH RSSDCKMVKK ASGANKSSKA HECPICFRVF KSGQALGGHK RSHSIESQER  300
RIKHKAAADM QIDLNLSAQD VDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012713001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934806e-32AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026846e-32CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K76e-32AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022563055.10.0zinc finger protein ZAT1-like
RefseqXP_022563056.10.0zinc finger protein ZAT1-like
RefseqXP_022563057.10.0zinc finger protein ZAT1-like
RefseqXP_022563058.10.0zinc finger protein ZAT1-like
RefseqXP_022563059.10.0zinc finger protein ZAT1-like
TrEMBLA0A078G6H30.0A0A078G6H3_BRANA; BnaC07g12290D protein
STRINGBo7g054100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-85C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]