PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00012206001 | ||||||||
Common Name | GSBRNA2T00012206001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 23241.9 Da PI: 7.1469 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 151 | 196 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq GSBRNA2T00012206001 151 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 196 99***********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-17 | 144 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.45E-14 | 144 | 200 | No hit | No description |
PROSITE profile | PS50888 | 17.409 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-16 | 148 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 151 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-14 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLDSLLTPST SSHMQTSATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DVFVDSRNQQ 60 IMMMPLSSHH QNDNVDGSSA HALYSGFSAT GSRPFHIPQG SGGGPMHQQG QTQRQPQQQA 120 SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD 180 KASMLDEIID YVKFLQLQVK VNLSFIFLLH S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00012206001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747024.1 | 1e-148 | transcription factor bHLH66-like isoform X1 | ||||
Swissprot | Q9ZUG9 | 9e-88 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A078G4H1 | 1e-154 | A0A078G4H1_BRANA; BnaC04g36670D protein | ||||
STRING | Bo4g154370.1 | 1e-131 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-77 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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