PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011918001

Common Name

GSBRNA2T00011918001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 309aa MW: 36362.5 Da PI: 6.5589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011918001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110	2.8e-34	10	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 ppG+rF Ptd e++ +yLk+ + ++k + + i++++iy+++P++L +++k+ + +ew+f s+r k +++g++++r + gyW+++ GSBRNA2T00011918001 10 PPGYRFVPTDAEIIYYYLKPFLPENKKSWPIIpIHHANIYESNPQQLTAEYKKgNLTEWFFISERTKIKTNGQKQKRvDHNGGYWHSKAV 99 9*******************99997776667**********9655551556****************76789**** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k++++ k+ +vg k+tL ++ g++p+ge+t+W+m+ey l GSBRNA2T00011918001 100 TKKIKV-KKDVVGYKTTLNYFVGKQPNGERTNWLMQEYWL 138 **.8999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-40	6	160	IPR003441	NAC domain
PROSITE profile	PS51005	38.141	9	160	IPR003441	NAC domain
Pfam	PF02365	1.6E-18	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MQSSSFLAYP PGYRFVPTDA EIIYYYLKPF LPENKKSWPI IPIHHANIYE SNPQQLTAEY 60 KKGNLTEWFF ISERTKIKTN GQKQKRVDHN GGYWHSKAVT KKIKVKKDVV GYKTTLNYFV 120 GKQPNGERTN WLMQEYWLES SGHNKTVCIV DYALCKIYLS PTAQKNMKEE DVELEEEAVQ 180 PRTVEIQQPQ PPQFYPTPTP LVSHQPQPQP QFWPTELDSH QAQRQDNEYQ EPLQAQPLNT 240 IYQHQSQRHN TESEYQEPHQ PQPLDTIDHH QPQLHDSAYQ EPPQPQPLDT IHYHRSQLHD 300 IEYQEPHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	7	158	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	7	158	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	7	158	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	7	158	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-20	7	158	18	166	NAC domain-containing protein 19
3swm_B	1e-20	7	158	18	166	NAC domain-containing protein 19
3swm_C	1e-20	7	158	18	166	NAC domain-containing protein 19
3swm_D	1e-20	7	158	18	166	NAC domain-containing protein 19
3swp_A	1e-20	7	158	18	166	NAC domain-containing protein 19
3swp_B	1e-20	7	158	18	166	NAC domain-containing protein 19
3swp_C	1e-20	7	158	18	166	NAC domain-containing protein 19
3swp_D	1e-20	7	158	18	166	NAC domain-containing protein 19
4dul_A	1e-20	7	158	15	163	NAC domain-containing protein 19
4dul_B	1e-20	7	158	15	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011918001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745281.1	0.0	NAC domain-containing protein 41-like
TrEMBL	A0A078JZT6	0.0	A0A078JZT6_BRANA; BnaAnng36380D protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	3e-51	NAC domain containing protein 64

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]