PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011832001
Common NameGSBRNA2T00011832001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 608aa    MW: 66874.4 Da    PI: 8.0005
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011832001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07225245526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f + G Ck Gd C +aHg
  GSBRNA2T00011832001 225 PCPDFKK-GSCKQGDACEYAHG 245
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.64E-1615141IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1715143IPR020683Ankyrin repeat-containing domain
PfamPF127967.0E-1055128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165989IPR002110Ankyrin repeat
PROSITE profilePS5029715.35359135IPR020683Ankyrin repeat-containing domain
CDDcd002041.72E-1361143No hitNo description
SMARTSM002489.8E-594126IPR002110Ankyrin repeat
PROSITE profilePS5008811.83594129IPR002110Ankyrin repeat
SMARTSM003561.5E-4220246IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5225245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4225247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028225247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4253283IPR000571Zinc finger, CCCH-type
SMARTSM0035658255278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MCGLSKNDSE LEHSFSALLE FAADNNVEGF KQQLSLVPCI NQMGLWYRRQ RFVRRMVVEQ  60
RTPLMVASIY GSVDVVKLIL SFPEAELNLA SGSDKSTALH CAASGASVNS LGVVKLLLSA  120
GADPNIHDAH GNRAVDVLVA SPHAPGSVSS PTKVDASEKK EYPLDPSLPD IKSGIYSTDE  180
FRMFSFKIRP CSRAYSHDWT ECPFAHPGEN ARRRDPRKFH YTCVPCPDFK KGSCKQGDAC  240
EYAHGVFECW LHPAQYRTRL CKDGTSCNRR VCFFAHLKEE LRPLYASTGS GLPSPSSAAS  300
TMDMASVLNM LPGSPSAAPI SPSASMGWPQ QNNIPALHLP GSNVQLSRLR SSLNARDIIP  360
SEQLSMMQEF EMQCMSSPRF MNHHHSARPK TLLTPSNLEE LFSAEVASSP RFSDQLGVSS  420
VLSPSHKSAL LNQLQSNKQQ SMLSPIKTNL MSSPKNVEHH SPRAMEPISP MNSRMKQQLH  480
PRSLSSRDFG SSLPRDMMPT DSGSPLSPWS SWDQNHGNKV DWSVQSDELG RLRKSHSLAN  540
NNNSNREADV TWVQQLVKDS AASPRNNNGA MNMNGSRPLV QGGSSVNPPH SESDILDAWL  600
EQLQLDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011832001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668025.10.0zinc finger CCCH domain-containing protein 56-like
RefseqXP_013668026.10.0zinc finger CCCH domain-containing protein 56-like
RefseqXP_022549304.10.0zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A078IY840.0A0A078IY84_BRANA; BnaA10g30000D protein
STRINGBra008877.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]