PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011734001
Common NameGSBRNA2T00011734001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 441aa    MW: 48265.4 Da    PI: 7.9426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011734001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.27.9e-34189245259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs+fprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  GSBRNA2T00011734001 189 DDGYNWRKYGQKQVKGSDFPRSYYKCTNPACPVKKKVERSV-DGQVTEIIYKGQHNHE 245
                          8****************************************.***************8 PP
2WRKY106.99.9e-34343401159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  GSBRNA2T00011734001 343 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVITTYEGKHNHD 401
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29182247IPR003657WRKY domain
PROSITE profilePS5081124.524183247IPR003657WRKY domain
SuperFamilySSF1182901.14E-25186247IPR003657WRKY domain
SMARTSM007741.1E-36188246IPR003657WRKY domain
PfamPF031061.2E-25189245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-37328403IPR003657WRKY domain
SuperFamilySSF1182904.97E-30335403IPR003657WRKY domain
PROSITE profilePS5081138.102338403IPR003657WRKY domain
SMARTSM007743.4E-39343402IPR003657WRKY domain
PfamPF031061.8E-26344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAENEEEQQK QSLTSKSSTG GASRPTISLP PRPFGEMFYS GGVGFSGFSP GPMTLVSNMF  60
SDHPDGFKSF SQLVAGAMAS PAAAAVPPGM FTVPPGLSPA TLLDSPSFFG LFSPIQGSFG  120
MTHQQALAQV TAQAVQGNSI QMQSESSTQQ QTLLTEAPSL PAPAQRDNSE VSVYEHRSQP  180
QNAADKPADD GYNWRKYGQK QVKGSDFPRS YYKCTNPACP VKKKVERSVD GQVTEIIYKG  240
QHNHEPPQNN KRGRDNNGSC SSLNKTKRDQ ETSQVTITEQ MSEASDSEEV GNAETSLGGT  300
HEDEPDPKRR NTEVRVSEPV SSSHMTVTEP RIIVQTRSEV DLLDDGYRWR KYGQKVVKGN  360
PYPRSYYKCT TPGCGVRKHV ERAANDPKAV ITTYEGKHNH DIPASRTSSH QLRPNNNLST  420
VNLNQQQTVA RLRLKEEQIT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-44189404878Probable WRKY transcription factor 4
2lex_A2e-44189404878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.283222e-61leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011734001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300270.0KF430027.1 Brassica rapa WRKY transcription factor 3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686649.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A078IVE90.0A0A078IVE9_BRANA; BnaA02g36910D protein
STRINGBra026554.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]