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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00011645001 |
Common Name | GSBRNA2T00011645001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 258aa MW: 29496.6 Da PI: 9.1448 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00011645001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.3 | 3.2e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k ienk+nrqvtfskRrng++KKA+ELSvLCdaeva+i+fss+gklye+
GSBRNA2T00011645001 9 KLIENKINRQVTFSKRRNGLMKKAYELSVLCDAEVALIVFSSRGKLYEFG 58
569*********************************************95 PP
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2 | K-box | 84 | 3.3e-28 | 79 | 178 | 6 | 99 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.....ekelqe 89
+++ e+++a +++qe++kLk+ +e+L r++RhllGedL+++slkeL Le+qLe +l++ R++K+++++e++e+l+kk e++l +
GSBRNA2T00011645001 79 NSRpEESTQACNWCQEVTKLKSHYESLVRTNRHLLGEDLGKMSLKELLGLERQLEAALTTTRKRKTQVMIEEMEDLRKKasyiiERQLGD 168
33357888999********************************************************************66666678888 PP
K-box 90 enkaLrkkle 99
+nk+L+ k++
GSBRNA2T00011645001 169 INKQLKIKFD 178
8888887775 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.534 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.96E-43 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-28 | 83 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.632 | 88 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MGRGRVEMKL IENKINRQVT FSKRRNGLMK KAYELSVLCD AEVALIVFSS RGKLYEFGSV 60 GVERTIERYH RCYNRSLSNS RPEESTQACN WCQEVTKLKS HYESLVRTNR HLLGEDLGKM 120 SLKELLGLER QLEAALTTTR KRKTQVMIEE MEDLRKKASY IIERQLGDIN KQLKIKFDQA 180 EGLAFKSFQY LWPNTAASVA GDPNNSEFPV QSSSVDCNTE PFLQIGFQQH YYVQGEGSSV 240 SKSNIACKTN FVQDWVL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |