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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011333001 | ||||||||
Common Name | GSBRNA2T00011333001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 41912.9 Da PI: 7.3478 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 2.9e-11 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H++ GSBRNA2T00011333001 42 PGEPDCSYYIRTGLCRFGSTCRFNHPR 68 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.5e-12 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G +CkF+H++ GSBRNA2T00011333001 89 QPECEYYLKTGTCKFGVTCKFHHPR 113 799********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.8e-12 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f+rtG+Ck+G++CkF+H++ GSBRNA2T00011333001 135 EVDCAYFLRTGHCKFGATCKFNHPQ 159 578********************97 PP | |||||||
4 | zf-CCCH | 37.2 | 4.9e-12 | 252 | 278 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G CkF+H++ GSBRNA2T00011333001 252 PGQPECQFYMKTGDCKFGTVCKFHHPR 278 5789*********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.8e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF+H++ GSBRNA2T00011333001 298 PGEPVCVFYSRYGICKFGPSCKFNHPM 324 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.699 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-8 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 46 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.108 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-10 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 251 | 279 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 253 | 278 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 255 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 257 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-7 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-9 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 301 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 302 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDFNAGVPMS SLSPLMINQE AMWQMNLSSD ETMETGSYPE RPGEPDCSYY IRTGLCRFGS 60 TCRFNHPRDR ELVIATARMR GEYPERIGQP ECEYYLKTGT CKFGVTCKFH HPRNKAGIAG 120 RVSLNMLGYP LRSNEVDCAY FLRTGHCKFG ATCKFNHPQP QPTTNLMVPT SGQQQSYPWS 180 RASFIASPRW QDPSGFTPLM MPQGVVWNPY SGQLGSVSPS GTGNEHNNYR NMQQNESGSS 240 VQPSENVFPE RPGQPECQFY MKTGDCKFGT VCKFHHPRDR QPPSPDCLLS PIGLPLRPGE 300 PVCVFYSRYG ICKFGPSCKF NHPMEVFAYD NTASETDEVV ETSRGDSRRV SVSETRQATT 360 TTSGQDTPTD TQQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.9972 | 1e-154 | flower| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011333001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117978 | 0.0 | AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10. | |||
GenBank | BT025966 | 0.0 | BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118604.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1 | ||||
Swissprot | Q8GXX7 | 0.0 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A078IWI8 | 0.0 | A0A078IWI8_BRANA; BnaAnng12770D protein | ||||
STRING | Bo1g155120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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