PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011094001
Common NameGSBRNA2T00011094001, LOC106454798
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 249aa    MW: 28248.8 Da    PI: 9.6964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011094001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-51141381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+kv +++l++ ++i++vd+++++PwdLp +    eke yfFs+r+ ky++g+r+nra++sgyWkatg dk
  GSBRNA2T00011094001  14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPA-SIIPDVDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRAAESGYWKATGIDK 99 
                          79****************************.89***************44...4789********************************9 PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++ +++ vglkktLvfy+g+ p+g++tdW+mheyrl
  GSBRNA2T00011094001 100 RVVTSrGNQIVGLKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                          9998857777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6010160IPR003441NAC domain
PROSITE profilePS5100558.77414160IPR003441NAC domain
PfamPF023655.4E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDKTNLAKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPASIIPDVD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRAAESG YWKATGIDKR VVTSRGNQIV GLKKTLVFYR  120
GKPPHGSRTD WIMHEYRLSS SPPSSIGPTQ NWVLCRIFLK KRAGDKNEDE GDSRNLRYNN  180
DQLEIITTNQ TEDKTKPIFF DFMRKERTTD LNLLPSSPSS GHASSGVTME IFSSDEETSS  240
CNSLRRNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216615171NO APICAL MERISTEM PROTEIN
3swm_A2e-511216618174NAC domain-containing protein 19
3swm_B2e-511216618174NAC domain-containing protein 19
3swm_C2e-511216618174NAC domain-containing protein 19
3swm_D2e-511216618174NAC domain-containing protein 19
3swp_A2e-511216618174NAC domain-containing protein 19
3swp_B2e-511216618174NAC domain-containing protein 19
3swp_C2e-511216618174NAC domain-containing protein 19
3swp_D2e-511216618174NAC domain-containing protein 19
4dul_A2e-511216615171NAC domain-containing protein 19
4dul_B2e-511216615171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.74580.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011094001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528170.0AK352817.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752356.10.0NAC domain-containing protein 83
SwissprotQ9FY931e-144NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A078IRF00.0A0A078IRF0_BRANA; BnaC03g71470D protein
STRINGBo3g009040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-143NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]