PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011076001 | ||||||||
Common Name | GSBRNA2T00011076001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 202aa MW: 22214.1 Da PI: 9.8289 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23.5 | 7.9e-08 | 163 | 184 | 1 | 20 |
GATA 1 Cs..nCgttkTplWRrgpdgnk 20 C+ nC++++Tp+WR+gp g+k GSBRNA2T00011076001 163 CTnmNCKAINTPMWRKGPLGPK 184 55559***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-5 | 166 | 182 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEKEFDLTLR LGLPSPTVET HLSLNTLTTD QGNNVDGNRR DNNDNGDIRG RRHILNNNES 60 TNGHEGGRKS VDVNTRYYNL IVNHFAGVGK ALNFKPLPMQ PSPAPVPETP TGSDYVLIDV 120 PAKRAQRNSL AFKNAVDAHE TLGRRWGCSG ACTAGRINEM RKCTNMNCKA INTPMWRKGP 180 LGPKASSLSN LKIFDLLTKF E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011076001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013731931.1 | 1e-135 | GATA transcription factor 29-like | ||||
Swissprot | Q9LT45 | 6e-31 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | A0A078IUT5 | 1e-147 | A0A078IUT5_BRANA; BnaA01g25540D protein | ||||
STRING | Bra023929.1-P | 1e-137 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 2e-28 | GATA transcription factor 29 |
Publications ? help Back to Top | |||
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