PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00010898001 | ||||||||
Common Name | GSBRNA2T00010898001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 22166.2 Da PI: 10.2353 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 83 | 103 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H GSBRNA2T00010898001 83 CEVCNKGFQREQNLQLHRRGH 103 *******************88 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 158 | 179 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k++ +s+ k H +t+ GSBRNA2T00010898001 158 NCEKCSKRYAVQSDWKAHSKTC 179 6*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 80 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.54E-7 | 80 | 103 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.5E-5 | 83 | 103 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 58 | 122 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 145 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.54E-7 | 152 | 177 | No hit | No description |
SMART | SM00355 | 220 | 157 | 177 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSSSYNNTIS SSSTQSFLLS SAATGSNNFN REETAMTMIQ QPNSVAPPPP PKKRRNQPGN 60 SYPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK 120 VYICPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKWNCE KCSKRYAVQS DWKAHSKTCG 180 TKEYRCDCGT IFSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-21 | 153 | 194 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 1e-21 | 153 | 194 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.17150 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00010898001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353183 | 0.0 | AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510654.1 | 1e-144 | PREDICTED: LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic-like | ||||
Swissprot | Q8RWX7 | 1e-123 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | A0A078IR80 | 1e-144 | A0A078IR80_BRANA; BnaA09g56990D protein | ||||
TrEMBL | M4EDF9 | 1e-143 | M4EDF9_BRARP; Uncharacterized protein | ||||
STRING | Bra026819.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-110 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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