PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010327001
Common NameGSBRNA2T00010327001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 335aa    MW: 36410.6 Da    PI: 8.2743
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010327001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-0982105125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          +kt+lC+ f++ GtC+y  +C+FaH
  GSBRNA2T00010327001  82 FKTKLCCKFRA-GTCPYVTNCNFAH 105
                          69*********.************* PP
2zf-CCCH18.34.1e-06149172326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           + C+ f+    C+yG++C+F+H+
  GSBRNA2T00010327001 149 GRHCKKFYTEEGCPYGESCSFMHD 172
                          5669*****9*************7 PP
3zf-CCCH42.88.5e-14210235126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  GSBRNA2T00010327001 210 WKTRICNKWEITGYCPFGAKCHFAHG 235
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-1379114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-879112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67181108IPR000571Zinc finger, CCCH-type
SMARTSM003560.003981107IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-782105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6146173IPR000571Zinc finger, CCCH-type
SMARTSM003560.68146173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-8147173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-17203239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-10205240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178209237IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9209236IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-11210235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSHHRRDSGG DVVHVIPTNN PPPENWFPNV GDSAVWATED DYNRVWAVNP DGENGPPNKK  60
SRGSPSSSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL RRPPPNWQEI  120
VAGTPTTVEQ REEFQIPSTT DESGRSFKGR HCKKFYTEEG CPYGESCSFM HDEASRNRES  180
VAISLGPAGS NSNLLVLGGI GIQIVKPSNW KTRICNKWEI TGYCPFGAKC HFAHGAAELH  240
RFGGGLVEGQ GKDGISPNPD VKQTGPNPKG HSDTTTTLLS PGLPHHSDAG YHSGVALQRA  300
SSAVTQKPGI RTLQKWKGPG KISLIYGDWI DDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71630.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010327001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892551e-135AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648063.10.0zinc finger CCCH domain-containing protein 12-like
RefseqXP_013725764.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A078IQ760.0A0A078IQ76_BRANA; BnaA05g35950D protein
STRINGBra010155.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]