PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009589001
Common NameGSBRNA2T00009589001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 446aa    MW: 50175.7 Da    PI: 6.3285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-5091371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ vdi+k+ePwdLp  + v+++++ew fF++ d+ky++g+r nrat +gyWkatgk
  GSBRNA2T00009589001   9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAVDICKYEPWDLPdlSVVRTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGK 97 
                          79*************************999.99**************96447788999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s +++ +g+k+tLvfy+grapkg++t W+mheyr+
  GSBRNA2T00009589001  98 DRKVKSGSTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137
                          ******99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-576160IPR003441NAC domain
PROSITE profilePS5100555.1569160IPR003441NAC domain
PfamPF023651.5E-2510136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEVLSLDALP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAVDICKYE PWDLPDLSVV  60
RTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGSTKIIG VKRTLVFYTG  120
RAPKGTRTCW IMHEYRATEK DLDGTKPGQN PFVICKLFKK QDVVSEASPE CGVEPAVSSP  180
TVVDEMRSEV ELSEVSLAFP TKEEPKHSTD VSGECQSDIS APEVTTNELD HIDWSSYLEF  240
ESLDHTMFSP LHSQVQSELG SAFNGFQYGS TEPFRNQNDP HIQTQYGSND PDQYMFDLLD  300
STFQIPYELP EMKHLAQPTQ EQILYEPQSL VNKINNDVSE TGIKIRTRRA QAQGCAEQFV  360
MQGNASRRLR LQVNHNSPKP ETDSIKKEVK ETTKGCGSFM RSKSSSEFIL KKVAAMGCSY  420
RGILKAGVVA VVFAMSVCSL TGQFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44416112166NO APICAL MERISTEM PROTEIN
1ut4_B1e-44416112166NO APICAL MERISTEM PROTEIN
1ut7_A1e-44416112166NO APICAL MERISTEM PROTEIN
1ut7_B1e-44416112166NO APICAL MERISTEM PROTEIN
4dul_A1e-44416112166NAC domain-containing protein 19
4dul_B1e-44416112166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.67010.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009589001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204400.0KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111639.10.0PREDICTED: NAC domain-containing protein 91 isoform X2
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A078G5270.0A0A078G527_BRANA; BnaA09g04810D protein
TrEMBLM4F6110.0M4F611_BRARP; Uncharacterized protein
STRINGBra036520.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  4. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]