PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00009476001

Common Name

GSBRNA2T00009476001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 276aa MW: 31181.3 Da PI: 4.4098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00009476001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+Fs + +L H++ H GSBRNA2T00009476001 77 FTCRFCNKRFSASQSLGGHMNAH 99 89******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.3E-6	73	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.74E-7	74	103	No hit	No description
PROSITE profile	PS50157	10.741	77	104	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSSGSSSVVQ PEKCNDINVA VEESREKATE NNNSGLGSDP QEVMSERRIE NPSRGYSAVR 60 TENGIMQHYT SETNKIFTCR FCNKRFSASQ SLGGHMNAHK RELQWERKRK EMEQMEQEFH 120 FQWMLSQYSQ GDLSNDNNLG NISEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG 180 NTFTNGFFSG GLEPMPSYNN YPPMLPRNVP PFPPHRTTNL PSYWYPQENV LNEEDVILKL 240 GNDNIVEIDD DDDDDDAVDQ PEEGTSKSWG ADLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00009476001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013689744.1	0.0	uncharacterized protein BNACNNG49940D
TrEMBL	A0A078G2U1	0.0	A0A078G2U1_BRANA; BnaA09g03920D protein
STRING	Bo9g010580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	2e-70	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]