PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009234001
Common NameGSBRNA2T00009234001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 300aa    MW: 33011.7 Da    PI: 6.7902
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009234001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17211246134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  GSBRNA2T00009234001 211 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 246
                          *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.41167102IPR010399Tify domain
SMARTSM009793.0E-1067102IPR010399Tify domain
PfamPF062003.0E-1172101IPR010399Tify domain
PfamPF062031.6E-15135177IPR010402CCT domain
PROSITE profilePS5101713.066135177IPR010402CCT domain
PROSITE profilePS501149.789205261IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-9205258IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-13208270No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15210252IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.7E-15211246IPR000679Zinc finger, GATA-type
CDDcd002021.51E-15211264No hitNo description
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDDGSLHGN NGGMHNGGDE LPMHVQYEHH GMMDEHADDG MNGGLETDIP SHLANSSDHR  60
GEVVDRGGEN GDQLTLSYQG QVYVFDHVLP EKVQAVLLLL GGREVPQTLP TTVGSPHQNN  120
RGLSGTPQRF SAPQRQASLL RFREKRKGRN FDKTIRYTVR KEVALRMQRK KGQFTSAKSS  180
NEESALTGPD WGSGQSWALE GCETQKPEAL CRHCGTSENS TPMMRRGPEG PRTLCNACGL  240
MWANKGALRD LSKGPPPQIT RNLPANKNDE SNLEADQMMV VAGDNSNSNW EKHCRQEKM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.76370.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009234001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145513.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-165GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078G2Q40.0A0A078G2Q4_BRANA; BnaA05g19840D protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-164ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]