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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00008396001 | ||||||||
Common Name | GSBRNA2T00008396001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 95aa MW: 10774.9 Da PI: 8.0719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 51 | 69 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cg+ F ksnL++H +++ GSBRNA2T00008396001 51 MCGQKFYAKSNLTTHKKKC 69 6****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
AGDDNVDRRS SHSNIPSQHS FEADLDPPTQ QRVRKLAERF STIEQQPFSC MCGQKFYAKS 60 NLTTHKKKCL ASKEEVDEEE DLAWAQKKRR SGGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00008396001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF124226 | 2e-47 | AF124226.2 Brassica rapa pollen-specific arabinogalacta protein BAN102 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667064.1 | 6e-66 | uncharacterized protein LOC106371520 | ||||
TrEMBL | A0A078JVY2 | 1e-64 | A0A078JVY2_BRANA; BnaCnng70350D protein (Fragment) | ||||
TrEMBL | A0A3P6GCT5 | 1e-64 | A0A3P6GCT5_BRAOL; Uncharacterized protein (Fragment) |
Publications ? help Back to Top | |||
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