PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007244001
Common NameGSBRNA2T00007244001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 440aa    MW: 48325.6 Da    PI: 7.3541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007244001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-114166126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+ff+rtG+C yG++C+++H+
  GSBRNA2T00007244001 41 PGERDCQFFLRTGQCGYGNTCRYNHP 66
                         5789*********************9 PP
2zf-CCCH36.48.7e-1287111327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG++Ck++H++
  GSBRNA2T00007244001  87 QPDCEYFLKTGACKYGSTCKYHHPK 111
                          789********************96 PP
3zf-CCCH28.33e-09132155326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+++++ G C++G  CkF+H+
  GSBRNA2T00007244001 132 EKSCPYYMQKGMCRFGVACKFHHP 155
                          667********************8 PP
4zf-CCCH35.51.6e-11270294327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++Crff+ tGtCkyGd Ck+ H++
  GSBRNA2T00007244001 270 RAECRFFMNTGTCKYGDDCKYTHPR 294
                          799********************95 PP
5zf-CCCH291.9e-09314337327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + C +fa  G+CkyG++CkF H++
  GSBRNA2T00007244001 314 KPACGNFAS-GYCKYGANCKFDHPM 337
                          689*****9.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.544068IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-94266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-64469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89684112IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-987111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-689112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-490110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6128157IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901129157IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7266296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187268295IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7268294IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-7273295IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92311338IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7313337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4317336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSETQQVQNS TGSIRSSENI EDTFRRMEVN EEQSSQYPDR PGERDCQFFL RTGQCGYGNT  60
CRYNHPLSHL PQGVFYQRDD LPERIGQPDC EYFLKTGACK YGSTCKYHHP KDRNGAGPVL  120
FNVLGYPMRQ GEKSCPYYMQ KGMCRFGVAC KFHHPHPNPQ PHNGSHATTY GMSSFPPAGF  180
PYAGGLPMMS LPPATYGVMP PPGTYGGAMP RPQVPHPQTY MPFMVPPPQG WSTYMAGSNP  240
IYNVKTQLDS SSSASVPVAV TSHQHSVSER AECRFFMNTG TCKYGDDCKY THPRERMLSP  300
NLLNPIVLPA RSGKPACGNF ASGYCKYGAN CKFDHPMHPY YGTGLTMPSL PTAYASNVTT  360
HLPSRSDSNA LSNGSKPAAE NHTSETEKQD DKSEVQDPSQ LSGSDSTAIS NESPSSETKK  420
QEDNPSQPDN SAKQDSSDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.188361e-139leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007244001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143918.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A078IRF70.0A0A078IRF7_BRANA; BnaA05g35010D protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]