PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00007198001

Common Name

GSBRNA2T00007198001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 1440aa MW: 165835 Da PI: 5.4473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00007198001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	1279	1325	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN fe Lr++lP++ K +Ka++L ++v+Y k+L GSBRNA2T00007198001 1279 KKHSDAERRRRLRINYQFEALRTILPNL-----IKQDKASVLGETVRYFKEL 1325 68***********************9.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-12	1268	1331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	1276	1325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.65E-7	1279	1329	No hit	No description
Pfam	PF00010	1.0E-9	1279	1325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-12	1280	1329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	1282	1331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1440 aa Download sequence Send to blast
MEKVYEELDE VKAANEKLRA KTELLENLKK VQNKQLIEIQ EARSVIEKQG FESEEKAREI 60 SELKGTNDDL QRCLREKDSV LKRLNEANDK LRADGEEKHR GFEDERRKLV LALDEAGEKN 120 IDLEQKSNVY RAEIEGLKGT LAVAEKKKIE AEKTVRALKE ARGRDDVAVK LEEEKTQVEE 180 KLKWKKEQFK HLEEAYEKLN NTFKSRKKEW EEERSTILDE IYSLQTKLDS QIRISEDLEK 240 KLQMCNSVLT QEETRRKHLE VQVSELKSRY EDAFAGCRDA RTQLDELVGK RDEEVAELRH 300 SLSTKEAYFK EMKYENGKLE LENRELLASL RELQEATIQG SGSSALSKLK SKFRNLENTH 360 KNCSANLRSK ESEWRSQLEK VAEEMNDYKS QLGSKEAAVN ELELELENFH SSADKMRLQY 420 EEISVMFLVL SRTVSEAQSR LVNVTDEQTK DERSKEKRCS ILIEELEQKS VALARAHEET 480 EAERERVACL LKRVETLDHF EEENLHMQKE VERYKQTVEE SSKFQAQMKE KLKEAEIDFE 540 EKLLQVCDAL DNTNSDLVAE REKVVGLTRQ IESFGVIKEK NLVMEKELQK HKEMLEESEK 600 RRVVLEELER DSKENIRELC SKVDTAYAKL AEEVEKNVSL IRKIESIDQN EEQRQRELES 660 YKERLEKATK SQILLQEKVV EVERHSKRKL AEVSEALEAA NCELSDKTSE AYQLEFQLWV 720 WKSIAKRLKV ELEQDQNLRK RVEASLLEQV TLGDAMMQER NELVNKLKAA AMSDSEKEIL 780 IKIMREKDKN LEEVQREVEL SQQESLTREL EGAVFAHITV ERVLQNERDE LETSLKSVSL 840 LLEQKQNEAT MVYKAWEKLA ADKILTEVET EAKKLMIIEL DEDISSISQK LERSDEYVSC 900 FRAEVESKQG ELKEVTTQLQ ERLRTLEADK TELDKQVASL SSERQELLCF ISELENGMSK 960 QCDEDTKLMK ALDKTAQRCD GFGKENNSIG SPRLVMKHED VAVEDSETTE EGHNARKVTV 1020 GSQCHKLLGM RDFTSARHLV KMNKQLGKDW QKLDQVEAIC DVIIAAENRL PNGFMDYYGM 1080 LRATRFGPVV LDDFRRLMKL LDWRCNGLPS SQEAAQYAYQ AWSMLSKPVM KARYDLDISS 1140 PMVGMVQLGF PEGSSFVPKE QNPNQDIGRG NDNKIFSLIS LLLLQGFWSL YLYTTTKHSP 1200 PFVFYRSLLS LGVAMVLLQH LEQGMRPLSQ RYNATTYSTT MGRNFFSSGT SSSNLFSSRG 1260 YSANAKPKSK TESKEVAAKK HSDAERRRRL RINYQFEALR TILPNLIKQD KASVLGETVR 1320 YFKELKKLVN EIPTTPSLED SLRLGQCKNR DFARVVFSCS DREGLMSEVA ESMKAADAKA 1380 VRAEMMTVGG RTKCVLFVQG VNGNEGLVKL KKALKPVVNR KPEATNNNNG VSLMLPQQQ*

Sequence ? help Back to Top

Protein Sequence Length: 1440 aa Download sequence Send to blast

MEKVYEELDE VKAANEKLRA KTELLENLKK VQNKQLIEIQ EARSVIEKQG FESEEKAREI  60
SELKGTNDDL QRCLREKDSV LKRLNEANDK LRADGEEKHR GFEDERRKLV LALDEAGEKN  120
IDLEQKSNVY RAEIEGLKGT LAVAEKKKIE AEKTVRALKE ARGRDDVAVK LEEEKTQVEE  180
KLKWKKEQFK HLEEAYEKLN NTFKSRKKEW EEERSTILDE IYSLQTKLDS QIRISEDLEK  240
KLQMCNSVLT QEETRRKHLE VQVSELKSRY EDAFAGCRDA RTQLDELVGK RDEEVAELRH  300
SLSTKEAYFK EMKYENGKLE LENRELLASL RELQEATIQG SGSSALSKLK SKFRNLENTH  360
KNCSANLRSK ESEWRSQLEK VAEEMNDYKS QLGSKEAAVN ELELELENFH SSADKMRLQY  420
EEISVMFLVL SRTVSEAQSR LVNVTDEQTK DERSKEKRCS ILIEELEQKS VALARAHEET  480
EAERERVACL LKRVETLDHF EEENLHMQKE VERYKQTVEE SSKFQAQMKE KLKEAEIDFE  540
EKLLQVCDAL DNTNSDLVAE REKVVGLTRQ IESFGVIKEK NLVMEKELQK HKEMLEESEK  600
RRVVLEELER DSKENIRELC SKVDTAYAKL AEEVEKNVSL IRKIESIDQN EEQRQRELES  660
YKERLEKATK SQILLQEKVV EVERHSKRKL AEVSEALEAA NCELSDKTSE AYQLEFQLWV  720
WKSIAKRLKV ELEQDQNLRK RVEASLLEQV TLGDAMMQER NELVNKLKAA AMSDSEKEIL  780
IKIMREKDKN LEEVQREVEL SQQESLTREL EGAVFAHITV ERVLQNERDE LETSLKSVSL  840
LLEQKQNEAT MVYKAWEKLA ADKILTEVET EAKKLMIIEL DEDISSISQK LERSDEYVSC  900
FRAEVESKQG ELKEVTTQLQ ERLRTLEADK TELDKQVASL SSERQELLCF ISELENGMSK  960
QCDEDTKLMK ALDKTAQRCD GFGKENNSIG SPRLVMKHED VAVEDSETTE EGHNARKVTV  1020
GSQCHKLLGM RDFTSARHLV KMNKQLGKDW QKLDQVEAIC DVIIAAENRL PNGFMDYYGM  1080
LRATRFGPVV LDDFRRLMKL LDWRCNGLPS SQEAAQYAYQ AWSMLSKPVM KARYDLDISS  1140
PMVGMVQLGF PEGSSFVPKE QNPNQDIGRG NDNKIFSLIS LLLLQGFWSL YLYTTTKHSP  1200
PFVFYRSLLS LGVAMVLLQH LEQGMRPLSQ RYNATTYSTT MGRNFFSSGT SSSNLFSSRG  1260
YSANAKPKSK TESKEVAAKK HSDAERRRRL RINYQFEALR TILPNLIKQD KASVLGETVR  1320
YFKELKKLVN EIPTTPSLED SLRLGQCKNR DFARVVFSCS DREGLMSEVA ESMKAADAKA  1380
VRAEMMTVGG RTKCVLFVQG VNGNEGLVKL KKALKPVVNR KPEATNNNNG VSLMLPQQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00007198001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624787.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g38062
Swissprot	P0CB23	0.0	Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBL	A0A078ISV3	0.0	A0A078ISV3_BRANA; BnaC03g61070D protein
STRING	Bo3g153000.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9592	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	0.0	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]