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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00007178001 | ||||||||
Common Name | GSBRNA2T00007178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 598aa MW: 68165.9 Da PI: 7.6312 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.5 | 2.3e-15 | 96 | 177 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdql 85 W+ +evlaL+++r+ +e+++ + We s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++++ +++ ++++f+++ GSBRNA2T00007178001 96 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDHHisnYNNKGNYRMFSEV 177 ********************998.....9*******************************999888887732223344466666665 PP | |||||||
2 | trihelix | 102.8 | 2.6e-32 | 450 | 536 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++rr+++ + +++++ plWe++skkm e g++rs+k+Ckekwen+nk++kk+k+ +kkr + +s+tcpyf+ql+ GSBRNA2T00007178001 450 RWPRDEVLALINIRRSINGISLssSSSKAVPLWERISKKMLESGYKRSSKRCKEKWENINKYFKKTKDVNKKR-PLDSRTCPYFHQLT 536 8**************998755411467889******************************************8.9***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-10 | 94 | 160 | No hit | No description |
PROSITE profile | PS50090 | 5.482 | 95 | 147 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.8E-20 | 449 | 537 | No hit | No description |
CDD | cd12203 | 8.22E-24 | 449 | 516 | No hit | No description |
PROSITE profile | PS50090 | 7.352 | 450 | 509 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNQQAQ HMLSLDSGKI 60 IHHQHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE VLALLRFRST VENWFPEFTW 120 ELTSRKLAEV GFKRSPQECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF 180 YHHGHNDDQH VSSEVGDNQN KRNNSLEGKE NVEEMGHNLL EEGKIDHQGQ SQVEESSMGN 240 KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKKER FGVLKGFCEG LVRNMIVQQE 300 EMHRKLLEDM VKKEEEKMAR EEAWKTQEME RLNKEVETRA NEQAMASDRN TSIIKFISKF 360 TGDNHDYGNG TVQSPSPSQD SSSLVLPKTQ GRRKCQTSSS LLPQALTPHY PISLQTNDIP 420 LEPISTETLK TKTQNRKPPI SDEKSDTGKR WPRDEVLALI NIRRSINGIS LSSSSSKAVP 480 LWERISKKML ESGYKRSSKR CKEKWENINK YFKKTKDVNK KRPLDSRTCP YFHQLTALYS 540 QPSTGTTTTA TDTSTAELET RVGSGDPDDF PAVMHVDANG AGEKSNVQFS GFDLALP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 274 | KKRKRK |
2 | 269 | 276 | KKRKRKKK |
3 | 269 | 277 | KKRKRKKKK |
4 | 270 | 278 | KRKRKKKKE |
5 | 271 | 275 | RKRKK |
6 | 271 | 277 | RKRKKKK |
7 | 271 | 278 | RKRKKKKE |
8 | 273 | 278 | RKKKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00007178001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129840.1 | 0.0 | PREDICTED: trihelix transcription factor GTL2-like | ||||
Swissprot | Q8H181 | 0.0 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | A0A078IRC5 | 0.0 | A0A078IRC5_BRANA; BnaAnng11490D protein | ||||
STRING | Bra020607.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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